8IEW

Cas005-crRNA-DNA complex

PDB DOI: https://doi.org/10.2210/pdb8IEW/pdb
NAKB: 8IEW
EM Map EMD-35374: EMDB EMDataResource

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Biggievirus Mos11
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-02-16 Released: 2024-02-28
Deposition Author(s): Zhang, X., Duan, Z.Q., Zhu, J.K.
Funding Organization(s): National Science Foundation (NSF, China)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Cryo-EM structure of Cas005-crRNA-DNA complex at 3.1 Angstroms resolution

Zhang, X., Duan, Z.Q., Zhu, J.K.

To be published.

Macromolecule Content

Total Structure Weight: 129.4 kDa
Atom Count: 5,321
Modelled Residue Count: 563
Deposited Residue Count: 885
Unique protein chains: 1
Unique nucleic acid chains: 3

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cas005	A	737	Biggievirus Mos11	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Length	Organism	Image
RNA (38-MER)	B	38	Biggievirus Mos11
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Length	Organism	Image
DNA (55-MER)	C	55	Biggievirus Mos11
Sequence Annotations Expand
Reference Sequence

Find similar nucleic acids by:

(by identity cutoff) | 3D Structure

Entity ID: 4
Molecule	Chains	Length	Organism	Image
DNA (55-MER)	D	55	Biggievirus Mos11
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-02-28

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation (NSF, China)	China	--

Revision History (Full details and data files)

Version 1.0: 2024-02-28
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.