8I6I

Crystal structure of cyclohexylamine oxidase from Acinetobacter sp. YT-02

• PDB DOI: https://doi.org/10.2210/pdb8I6I/pdb

• Classification: FLAVOPROTEIN
• Organism(s): Acinetobacter sp. YT-02
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-01-28 Released: 2024-09-04 
• Deposition Author(s): Han, Z., Yan, D.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.49 Å
• R-Value Free: 0.189 
• R-Value Work: 0.162 
• R-Value Observed: 0.164 

Starting Model: experimental

Literature

Crystal structure of cyclohexylamine oxidase from Acinetobacter sp. YT-02

Han, Z.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 98.65 kDa 
• Atom Count: 7,862 
• Modelled Residue Count: 896 
• Deposited Residue Count: 896 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Amine oxidase	A, B [auth C]	448	Acinetobacter sp. YT-02	Mutation(s): 0  Gene Names: CF596_10820
UniProt
Find proteins for A0A2A5PFR1 (Acinetobacter sp. YT-02) Explore A0A2A5PFR1  Go to UniProtKB:  A0A2A5PFR1

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
FAD (Subject of Investigation/LOI)	C [auth A], D [auth C]	FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.49 Å
• R-Value Free: 0.189 
• R-Value Work: 0.162 
• R-Value Observed: 0.164 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 109.686	α = 90
b = 129.372	β = 90
c = 167.385	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-09-04 
Deposition Author(s): Han, Z., Yan, D.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-09-04
  Type: Initial release