8I57

Uroporphyrin III (UPIII)-bound CfbA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.209 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.0 of the entry. See complete history


Literature

Substrate selectivity of CfbA

Ogawa, S.Hikita, M.Fujishiro, T.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Sirohydrochlorin cobaltochelatase
A, B
143Methanocaldococcus jannaschii DSM 2661Mutation(s): 0 
Gene Names: cbiXcfbAMJ0970
EC: 4.99.1.3 (PDB Primary Data), 4.99.1.11 (PDB Primary Data)
UniProt
Find proteins for Q58380 (Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440))
Explore Q58380 
Go to UniProtKB:  Q58380
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ58380
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
UP3 (Subject of Investigation/LOI)
Query on UP3

Download Ideal Coordinates CCD File 
C [auth B]3,3',3'',3'''-[3,8,13,17-tetrakis(carboxymethyl)porphyrin-2,7,12,18-tetrayl]tetrapropanoic acid
C40 H38 N4 O16
VZVFNUAIRVUCEW-XFMUOGEMSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.207 
  • R-Value Observed: 0.209 
  • Space Group: P 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 68.22α = 90
b = 68.22β = 90
c = 82.65γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
XDSdata reduction
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan19H04639

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-31
    Type: Initial release