Crystal structure of the p97-N/D1 hexmaer in complex with six p47-UBX domains
Nguyen, T.Q., Kang, W.(2024) J Korean Chem Soc 68: 25-31
Experimental Data Snapshot
Starting Model: experimental
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(2024) J Korean Chem Soc 68: 25-31
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Transitional endoplasmic reticulum ATPase | 438 | Homo sapiens | Mutation(s): 2  Gene Names: VCP EC: 3.6.4.6 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P55072 (Homo sapiens) Explore P55072  Go to UniProtKB:  P55072 | |||||
PHAROS:  P55072 GTEx:  ENSG00000165280  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P55072 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NSFL1 cofactor p47 | 85 | Homo sapiens | Mutation(s): 0  Gene Names: NSFL1C, UBXN2C | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UNZ2 (Homo sapiens) Explore Q9UNZ2  Go to UniProtKB:  Q9UNZ2 | |||||
PHAROS:  Q9UNZ2 GTEx:  ENSG00000088833  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UNZ2 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ADP (Subject of Investigation/LOI) Query on ADP | AA [auth C] BA [auth D] CA [auth E] DA [auth F] EA [auth G] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 170.78 | α = 90 |
b = 178.85 | β = 119.8 |
c = 171.33 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-2000 | data reduction |
SCALA | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Research Foundation (NRF, Korea) | Korea, Republic Of | 2021R1A6A1A10044154 |
National Research Foundation (NRF, Korea) | Korea, Republic Of | 2022R1C1C1004221 |