8HR0

The complex structure of COPII coat with HCoV-OC43 DD sorting motif


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.34 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.229 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Tighter ER retention of SARS-CoV-2 Omicron spike caused by a constellation of folding disruptive mutations

Li, Y.Q.Yang, M.R.Nan, Y.N.Wang, J.M.Guo, J.J.He, P.F.Dai, W.X.Zhou, S.Q.Wang, S.J.Zhang, Y.Ma, W.F.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein transport protein Sec23A765Homo sapiensMutation(s): 0 
Gene Names: SEC23A
UniProt & NIH Common Fund Data Resources
Find proteins for Q15436 (Homo sapiens)
Explore Q15436 
Go to UniProtKB:  Q15436
PHAROS:  Q15436
GTEx:  ENSG00000100934 
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UniProt GroupQ15436
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Protein transport protein Sec24A751Homo sapiensMutation(s): 0 
Gene Names: SEC24A
UniProt & NIH Common Fund Data Resources
Find proteins for O95486 (Homo sapiens)
Explore O95486 
Go to UniProtKB:  O95486
PHAROS:  O95486
GTEx:  ENSG00000113615 
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UniProt GroupO95486
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Vesicle-trafficking protein SEC22b199Homo sapiensMutation(s): 0 
Gene Names: SEC22BSEC22L1
UniProt & NIH Common Fund Data Resources
Find proteins for O75396 (Homo sapiens)
Explore O75396 
Go to UniProtKB:  O75396
PHAROS:  O75396
GTEx:  ENSG00000265808 
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UniProt GroupO75396
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  • Reference Sequence

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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
HCoV-OC4310Human coronavirus OC43Mutation(s): 0 
UniProt
Find proteins for P36334 (Human coronavirus OC43)
Explore P36334 
Go to UniProtKB:  P36334
Entity Groups  
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UniProt GroupP36334
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.34 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.223 
  • R-Value Observed: 0.229 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 148.58α = 90
b = 96.203β = 90.01
c = 130.465γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Beijing University of Chinese Medicine (BUCM)China90011451310011, 1000061223476, ZYYCXTD-C-202006

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-20
    Type: Initial release