8HBG

FMDV (A/TUR/14/98) in complex with M678F


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Foot-and-mouth disease virus antigenic landscape and reduced immunogenicity elucidated in atomic detail.

Li, H.Liu, P.Dong, H.Dekker, A.Harmsen, M.M.Guo, H.Wang, X.Sun, S.

(2024) Nat Commun 15: 8774-8774

  • DOI: https://doi.org/10.1038/s41467-024-53027-5
  • Primary Citation of Related Structures:  
    8HBG, 8HBI, 8HBJ, 8HEE, 8HEG

  • PubMed Abstract: 

    Unlike most other picornaviruses, foot-and-mouth disease (FMD) intact virions (146S) dissociate easily into small pentameric subunits (12S). This causes a dramatically decreased immunogenicity by a mechanism that remains elusive. Here, we present the high-resolution structures of 12S (3.2 Å) and its immune complex of a single-domain antibody (VHH) targeting the particle interior (3.2 Å), as well as two 146S-specific VHHs complexed to distinct sites on the 146S capsid surface (3.6 Å and 2.9 Å). The antigenic landscape of 146S is depicted using 13 known FMD virus-antibody complexes. Comparison of the immunogenicity of 146S and 12S in pigs, focusing on the resulting antigenic sites and incorporating structural analysis, reveals that dissociation of 146S leads to structural alteration and destruction of multiple epitopes, resulting in significant differences in antibody profiles/lineages induced by 12S and 146S. Furthermore, 146S generates higher synergistic neutralizing antibody titers compared to 12S, whereas both particles induce similar total FMD virus specific antibody titers. This study can guide the structure-based rational design of novel multivalent and broad-spectrum recombinant vaccines for protection against FMD.


  • Organizational Affiliation

    State Key Laboratory for Animal Disease Control and Prevention, College of Veterinary Medicine, Lanzhou University, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
VP1 of capsid protein211Foot-and-mouth disease virus AMutation(s): 0 
UniProt
Find proteins for A0A7D5BJ70 (Foot-and-mouth disease virus A)
Explore A0A7D5BJ70 
Go to UniProtKB:  A0A7D5BJ70
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7D5BJ70
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
VP2 of capsid protein218Foot-and-mouth disease virus AMutation(s): 0 
UniProt
Find proteins for A0A7D5BJ70 (Foot-and-mouth disease virus A)
Explore A0A7D5BJ70 
Go to UniProtKB:  A0A7D5BJ70
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7D5BJ70
Sequence Annotations
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
VP3 of capsid protein221Foot-and-mouth disease virus AMutation(s): 0 
UniProt
Find proteins for A0A7D5BJ70 (Foot-and-mouth disease virus A)
Explore A0A7D5BJ70 
Go to UniProtKB:  A0A7D5BJ70
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7D5BJ70
Sequence Annotations
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
VP4 of capsid protein85Foot-and-mouth disease virus AMutation(s): 0 
UniProt
Find proteins for A0A7D5BJ70 (Foot-and-mouth disease virus A)
Explore A0A7D5BJ70 
Go to UniProtKB:  A0A7D5BJ70
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7D5BJ70
Sequence Annotations
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  • Reference Sequence
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
M678F nab119Lama glamaMutation(s): 0 
Entity Groups  
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-01
    Type: Initial release
  • Version 1.1: 2024-10-23
    Changes: Data collection, Database references, Structure summary