8H92

Ziziphus jujuba adenylyl cyclase

• PDB DOI: https://doi.org/10.2210/pdb8H92/pdb

• Classification: PLANT PROTEIN
• Organism(s): Ziziphus jujuba
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): No 


• Deposited: 2022-10-24 Released: 2024-01-03 
• Deposition Author(s): Liu, Z.G., Wang, L.L., Yuan, Y., Liu, M.J.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.253 
• R-Value Work: 0.198 
• R-Value Observed: 0.201 

Literature

A super plant adenylyl cyclase-ZjAC

Liu, Z.G., Yuan, Y., Wang, L.L., Zhao, X., Wang, L.X., Wang, L.H., Zhao, Z.H., Zhao, J., Dai, L., Wang, J.R., Liu, P., Liu, M.J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: homology

Macromolecule Content

• Total Structure Weight: 47.92 kDa 
• Atom Count: 3,348 
• Modelled Residue Count: 401 
• Deposited Residue Count: 414 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
triphosphate tunel metalloenzyme 3-like	A, B	207	Ziziphus jujuba	Mutation(s): 0  Gene Names: LOC107415651
UniProt
Find proteins for A0A6P3ZKP6 (Ziziphus jujuba) Explore A0A6P3ZKP6  Go to UniProtKB:  A0A6P3ZKP6

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	C [auth A], D [auth A], F [auth B], G [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
MG	E [auth A], H [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.253 
• R-Value Work: 0.198 
• R-Value Observed: 0.201 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 66.84	α = 90
b = 84.578	β = 90
c = 95.139	γ = 90

Software Package:

Software Name	Purpose
PHENIX	model building
PHENIX	refinement
REFMAC	refinement
HKL-3000	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-01-03 
Deposition Author(s): Liu, Z.G., Wang, L.L., Yuan, Y., Liu, M.J.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History  

• Version 1.0: 2024-01-03
  Type: Initial release