8H8Y | pdb_00008h8y

Crystal structure of AbHheG from Acidimicrobiia bacterium

PDB DOI: https://doi.org/10.2210/pdb8H8Y/pdb

Classification: OXIDOREDUCTASE
Organism(s): Acidimicrobiia bacterium
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-10-24 Released: 2023-08-02
Deposition Author(s): Zhou, C.H., Chen, X., Han, X., Liu, W.D., Wu, Q.Q., Zhu, D.M., Ma, Y.H.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free:
0.200 (Depositor), 0.207 (DCC)
R-Value Work:
0.172 (Depositor), 0.183 (DCC)
R-Value Observed:
0.173 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Flipping the Substrate Creates a Highly Selective Halohydrin Dehalogenase for the Synthesis of Chiral 4-Aryl-2-oxazolidinones from Readily Available Epoxides

Zhou, C., Chen, X., Lv, T., Han, X., Feng, J., Liu, W., Wu, Q., Zhu, D.

(2023) ACS Catal 13: 4768-4777

DOI: https://doi.org/10.1021/acscatal.2c06417

Macromolecule Content

Total Structure Weight: 105.3 kDa
Atom Count: 8,082
Modeled Residue Count: 979
Deposited Residue Count: 984
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
alpha/beta hydrolase	A, B, C, D	246	Acidimicrobiia bacterium	Mutation(s): 0
UniProt
Find proteins for A0ACD6BA04 (Acidimicrobiia bacterium) Explore A0ACD6BA04 Go to UniProtKB: A0ACD6BA04
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6BA04
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain G [auth D] SDF format, chain F [auth C] SDF format, chain E [auth B] MOL2 format, chain G [auth D] MOL2 format, chain F [auth C] MOL2 format, chain E [auth B] mmCIF format, chain G [auth D] mmCIF format, chain F [auth C] mmCIF format, chain E [auth B]	E [auth B], F [auth C], G [auth D]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain E [auth B] Focus chain F [auth C] Focus chain G [auth D] Interactions & Density Focus chain E [auth B] Focus chain F [auth C] Focus chain G [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free: 0.200 (Depositor), 0.207 (DCC)
R-Value Work: 0.172 (Depositor), 0.183 (DCC)
R-Value Observed: 0.173 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 60.887	α = 69.24
b = 62.407	β = 82.88
c = 71.415	γ = 62.19

Software Package:

Software Name	Purpose
Aimless	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-08-02

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	--

Revision History (Full details and data files)

Version 1.0: 2023-08-02
Type: Initial release
Version 1.1: 2024-05-29
Changes: Data collection
Version 1.2: 2026-03-11
Changes: Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.