Cryo-EM structure of Synechocystis sp. PCC 6803 CTP-bound RPitc
You, L.L., Shen, L.Q., Zhang, Y.(2023) Proc Natl Acad Sci U S A 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2023) Proc Natl Acad Sci U S A 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit alpha | 328 | Synechocystis sp. PCC 6803 | Mutation(s): 0  Gene Names: rpoA, sll1818 EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for P73297 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P73297  Go to UniProtKB:  P73297 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P73297 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit beta | 1,104 | Synechocystis sp. PCC 6803 | Mutation(s): 0  Gene Names: rpoB, sll1787 EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for P77965 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P77965  Go to UniProtKB:  P77965 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P77965 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit gamma | 626 | Synechocystis sp. PCC 6803 | Mutation(s): 0  Gene Names: rpoC1, slr1265 EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for P74177 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P74177  Go to UniProtKB:  P74177 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P74177 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit omega | 76 | Synechocystis sp. PCC 6803 | Mutation(s): 0  Gene Names: rpoZ, ssl2982 EC: 2.7.7.6 | ||
UniProt | |||||
Find proteins for P74352 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P74352  Go to UniProtKB:  P74352 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P74352 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RNA polymerase sigma factor SigA | 429 | Synechocystis sp. PCC 6803 | Mutation(s): 0  Gene Names: sigA, rpoD, rpoD1, slr0653 | ||
UniProt | |||||
Find proteins for P74565 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P74565  Go to UniProtKB:  P74565 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P74565 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase subunit beta' | G [auth Z] | 1,323 | Synechocystis sp. PCC 6803 | Mutation(s): 0  Gene Names: rpoC2, sll1789 EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P73334 (Synechocystis sp. (strain PCC 6803 / Kazusa)) Explore P73334  Go to UniProtKB:  P73334 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P73334 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Length | Organism | Image | |
Nontemplate strand DNA | H [auth 1] | 67 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Length | Organism | Image | |
Template strand DNA | I [auth 2] | 67 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 9 | |||||
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Molecule | Chains | Length | Organism | Image | |
RNA (5'-R(*CP*CP*GP*A)-3') | J [auth 3] | 4 | synthetic construct | ||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CTP Query on CTP | O [auth 2] | CYTIDINE-5'-TRIPHOSPHATE C9 H16 N3 O14 P3 PCDQPRRSZKQHHS-XVFCMESISA-N | |||
ZN Query on ZN | L [auth D], N [auth Z] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | K [auth D], M [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
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RECONSTRUCTION | RELION | 3.08 |
MODEL REFINEMENT | PHENIX | 10.14 |
Funding Organization | Location | Grant Number |
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Chinese Academy of Sciences | China | -- |