8GY6 | pdb_00008gy6

Structure of SARS-CoV-2 RNA-dependent RNA polymerase with gossypol binding

• PDB DOI: https://doi.org/10.2210/pdb8GY6/pdb
• EM Map EMD-34370: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Severe acute respiratory syndrome coronavirus 2
• Expression System: Spodoptera frugiperda
• Mutation(s): No 


• Deposited: 2022-09-21 Released: 2023-11-01 
• Deposition Author(s): Wang, W., Ren, M., Li, F.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Aggregation State: PARTICLE 
• Reconstruction Method: TOMOGRAPHY 

Literature

Structure of SARS-CoV-2 RNA-dependent RNA polymerase with gossypol binding

Wang, W., Li, W., Ren, M., Li, F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 4-mer - A1B1C1D1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content 

• Total Structure Weight: 160.87 kDa 
• Atom Count: 8,587 
• Modeled Residue Count: 1,071 
• Deposited Residue Count: 1,411 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA-directed RNA polymerase	A	932	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 0  EC: 2.7.7.48
UniProt
Find proteins for P0DTD1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTD1  Go to UniProtKB:  P0DTD1

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Non-structural protein 8	B, D	198	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 0  Gene Names: rep, 1a-1b
UniProt
Find proteins for P0DTD1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTD1  Go to UniProtKB:  P0DTD1

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Non-structural protein 7	C	83	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 0
UniProt
Find proteins for P0DTC1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC1  Go to UniProtKB:  P0DTC1

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GO3 (Subject of Investigation/LOI)	E [auth A], F [auth A]	Gossypol C30 H30 O8 QBKSWRVVCFFDOT-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Aggregation State: PARTICLE 
• Reconstruction Method: TOMOGRAPHY 

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2023-11-01 
Deposition Author(s): Wang, W., Ren, M., Li, F.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)		31621005
National Natural Science Foundation of China (NSFC)		U1804231
National Natural Science Foundation of China (NSFC)		31972469

Revision History  

• Version 1.0: 2023-11-01
  Type: Initial release