8GMX | pdb_00008gmx

Crystal structure of pilin-specific sortase SrtC2 from Lactobacillus rhamnosus GG

PDB DOI: https://doi.org/10.2210/pdb8GMX/pdb

Classification: HYDROLASE
Organism(s): Lacticaseibacillus rhamnosus GG
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-08-22 Released: 2023-08-30
Deposition Author(s): Das, S., Megta, A.K., Pratap, S., Krishnan, V.
Funding Organization(s): Department of Biotechnology (DBT, India)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.61 Å
R-Value Free:
0.249 (Depositor), 0.248 (DCC)
R-Value Work:
0.205 (Depositor), 0.206 (DCC)
R-Value Observed:
0.207 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of pilin-specific sortase SrtC2 from Lactobacillus rhamnosus GG

Das, S., Megta, A.K., Pratap, S., Krishnan, V.

To be published.

Macromolecule Content

Total Structure Weight: 17.28 kDa
Atom Count: 1,073
Modeled Residue Count: 141
Deposited Residue Count: 152
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Class C sortase	A	152	Lacticaseibacillus rhamnosus GG	Mutation(s): 0 Gene Names: GM657_11825, LRHM_2278
UniProt
Find proteins for A0A7S7JH80 (Lacticaseibacillus rhamnosus (strain ATCC 53103 / LMG 18243 / GG)) Explore A0A7S7JH80 Go to UniProtKB: A0A7S7JH80
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A7S7JH80
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.61 Å
R-Value Free: 0.249 (Depositor), 0.248 (DCC)
R-Value Work: 0.205 (Depositor), 0.206 (DCC)
R-Value Observed: 0.207 (Depositor)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.4	α = 90
b = 80.4	β = 90
c = 46.895	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
STARANISO	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-08-30

Deposition Author(s):

Funding Organization	Location	Grant Number
Department of Biotechnology (DBT, India)	India	BT/PR5891/BRB/10/1098/2012

Revision History (Full details and data files)

Version 1.0: 2023-08-30
Type: Initial release
Version 1.1: 2026-03-04
Changes: Refinement description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.