8GEN

E. eligens beta-glucuronidase bound to UNC10201652-glucuronide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.94 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.248 
  • R-Value Observed: 0.251 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Gut microbial beta-glucuronidases influence endobiotic homeostasis and are modulated by diverse therapeutics.

Simpson, J.B.Walker, M.E.Sekela, J.J.Ivey, S.M.Jariwala, P.B.Storch, C.M.Kowalewski, M.E.Graboski, A.L.Lietzan, A.D.Walton, W.G.Davis, K.A.Cloer, E.W.Borlandelli, V.Hsiao, Y.C.Roberts, L.R.Perlman, D.H.Liang, X.Overkleeft, H.S.Bhatt, A.P.Lu, K.Redinbo, M.R.

(2024) Cell Host Microbe 32: 925-944.e10

  • DOI: https://doi.org/10.1016/j.chom.2024.04.018
  • Primary Citation of Related Structures:  
    8GEN, 8GEO, 8GEQ, 8GER, 8GES, 8GET

  • PubMed Abstract: 

    Hormones and neurotransmitters are essential to homeostasis, and their disruptions are connected to diseases ranging from cancer to anxiety. The differential reactivation of endobiotic glucuronides by gut microbial β-glucuronidase (GUS) enzymes may influence interindividual differences in the onset and treatment of disease. Using multi-omic, in vitro, and in vivo approaches, we show that germ-free mice have reduced levels of active endobiotics and that distinct gut microbial Loop 1 and FMN GUS enzymes drive hormone and neurotransmitter reactivation. We demonstrate that a range of FDA-approved drugs prevent this reactivation by intercepting the catalytic cycle of the enzymes in a conserved fashion. Finally, we find that inhibiting GUS in conventional mice reduces free serotonin and increases its inactive glucuronide in the serum and intestines. Our results illuminate the indispensability of gut microbial enzymes in sustaining endobiotic homeostasis and indicate that therapeutic disruptions of this metabolism promote interindividual response variabilities.


  • Organizational Affiliation

    Department of Chemistry, University of North Carolina, Chapel Hill, NC, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Beta-glucuronidase614Lachnospira eligensMutation(s): 0 
Gene Names: uidAERS852490_00568ERS852492_02599
EC: 3.2.1.31
UniProt
Find proteins for A0A174ZZA3 (Lachnospira eligens)
Explore A0A174ZZA3 
Go to UniProtKB:  A0A174ZZA3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A174ZZA3
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
I9G (Subject of Investigation/LOI)
Query on I9G

Download Ideal Coordinates CCD File 
B [auth A]8-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-5-(morpholin-4-yl)-1,2,3,4-tetrahydro[1,2,3]triazino[4',5':4,5]thieno[2,3 -c]isoquinoline
C26 H33 N7 O7 S
AQRGEQSNANJABA-WFFUTXBBSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.94 Å
  • R-Value Free: 0.277 
  • R-Value Work: 0.248 
  • R-Value Observed: 0.251 
  • Space Group: P 64 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 180.304α = 90
b = 180.304β = 90
c = 133.566γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM135218

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-14
    Type: Initial release
  • Version 1.1: 2024-09-04
    Changes: Database references