Crystal Structure of HIV-1 LM/HT CLADE A/E CRF01 GP120 Core in Complex with TFH-II-128
Nguyen, D.N., Tolbert, W.D., Pazgier, M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
HIV-1 LM/HT Clade A/E CRF01 gp120 core | 355 | Human immunodeficiency virus 1 | Mutation(s): 7  Gene Names: HIV-1 Env | ||
UniProt | |||||
Find proteins for A0A0M3KKW9 (Human immunodeficiency virus 1) Explore A0A0M3KKW9  Go to UniProtKB:  A0A0M3KKW9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0M3KKW9 | ||||
Glycosylation | |||||
Glycosylation Sites: 12 | |||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
Z6F (Subject of Investigation/LOI) Query on Z6F | N [auth A] | (3S,5R)-N-(4-chloro-3-fluorophenyl)-5-(hydroxymethyl)-1-(4-methylpiperazine-1-carbonyl)piperidine-3-carboxamide C19 H26 Cl F N4 O3 YJQIDERPUXKPOK-KGLIPLIRSA-N | |||
EPE Query on EPE | O [auth A] | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N | |||
NAG Query on NAG | B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 62.18 | α = 90 |
b = 66.115 | β = 90 |
c = 91.173 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | R01AI129769 |