Structural basis for kainate receptor activation by a partial agonist
Bogdanovic, N., Tajima, N.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Glutamate receptor ionotropic, kainate 2 | 875 | Rattus norvegicus | Mutation(s): 0  Gene Names: Grik2, Glur6 Membrane Entity: Yes  | ||
UniProt | |||||
Find proteins for P42260 (Rattus norvegicus) Explore P42260  Go to UniProtKB:  P42260 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P42260 | ||||
Glycosylation | |||||
Glycosylation Sites: 4 | Go to GlyGen: P42260-1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | E, G, H, I, K E, G, H, I, K, L | 5 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G22768VO GlyCosmos:  G22768VO GlyGen:  G22768VO |
Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
DOQ (Subject of Investigation/LOI) Query on DOQ | N [auth A], Q [auth B], S [auth C], V [auth D] | (2S,3S,4S)-2-CARBOXY-4-[(1Z,3E,5R)-5-CARBOXY-1-METHYL-1,3-HEXADIENYL]-3-PYRROLIDINEACETIC ACID C15 H21 N O6 VZFRNCSOCOPNDB-AOKDLOFSSA-N | |||
NAG Query on NAG | M [auth A] O [auth B] P [auth B] R [auth C] T [auth D] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Task | Software Package | Version |
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RECONSTRUCTION | RELION | 4.0 |
MODEL REFINEMENT | PHENIX | 1.20.1.4487 |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R35 GM147266-01 |