8G8Y

Hepatitis B virus capsid bound to importin alpha1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for nuclear import of hepatitis B virus (HBV) nucleocapsid core.

Yang, R.Ko, Y.H.Li, F.Lokareddy, R.K.Hou, C.D.Kim, C.Klein, S.Antolinez, S.Marin, J.F.Perez-Segura, C.Jarrold, M.F.Zlotnick, A.Hadden-Perilla, J.A.Cingolani, G.

(2024) Sci Adv 10: eadi7606-eadi7606

  • DOI: https://doi.org/10.1126/sciadv.adi7606
  • Primary Citation of Related Structures:  
    7UMI, 8G5V, 8G6V, 8G8Y, 8GCN

  • PubMed Abstract: 

    Nuclear import of the hepatitis B virus (HBV) nucleocapsid is essential for replication that occurs in the nucleus. The ~360-angstrom HBV capsid translocates to the nuclear pore complex (NPC) as an intact particle, hijacking human importins in a reaction stimulated by host kinases. This paper describes the mechanisms of HBV capsid recognition by importins. We found that importin α1 binds a nuclear localization signal (NLS) at the far end of the HBV coat protein Cp183 carboxyl-terminal domain (CTD). This NLS is exposed to the capsid surface through a pore at the icosahedral quasi-sixfold vertex. Phosphorylation at serine-155, serine-162, and serine-170 promotes CTD compaction but does not affect the affinity for importin α1. The binding of 30 importin α1/β1 augments HBV capsid diameter to ~620 angstroms, close to the maximum size trafficable through the NPC. We propose that phosphorylation favors CTD externalization and prompts its compaction at the capsid surface, exposing the NLS to importins.


  • Organizational Affiliation

    Department of Biochemistry and Molecular Biology, Thomas Jefferson University, 1020 Locust Street, Philadelphia, PA 19107, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Core protein Cp183
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
144Hepatitis B virusMutation(s): 0 
UniProt
Find proteins for A0A1B2G2S7 (Hepatitis B virus)
Explore A0A1B2G2S7 
Go to UniProtKB:  A0A1B2G2S7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1B2G2S7
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2024-01-31
    Type: Initial release
  • Version 1.1: 2024-08-21
    Changes: Data collection, Database references