8FYF

Human TMEM175-LAMP1 transmembrane domain only complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Lysosomal LAMP proteins regulate lysosomal pH by direct inhibition of the TMEM175 channel.

Zhang, J.Zeng, W.Han, Y.Lee, W.R.Liou, J.Jiang, Y.

(2023) Mol Cell 83: 2524-2539.e7

  • DOI: https://doi.org/10.1016/j.molcel.2023.06.004
  • Primary Citation of Related Structures:  
    8FY5, 8FYF

  • PubMed Abstract: 

    Maintaining a highly acidic lysosomal pH is central to cellular physiology. Here, we use functional proteomics, single-particle cryo-EM, electrophysiology, and in vivo imaging to unravel a key biological function of human lysosome-associated membrane proteins (LAMP-1 and LAMP-2) in regulating lysosomal pH homeostasis. Despite being widely used as a lysosomal marker, the physiological functions of the LAMP proteins have long been overlooked. We show that LAMP-1 and LAMP-2 directly interact with and inhibit the activity of the lysosomal cation channel TMEM175, a key player in lysosomal pH homeostasis implicated in Parkinson's disease. This LAMP inhibition mitigates the proton conduction of TMEM175 and facilitates lysosomal acidification to a lower pH environment crucial for optimal hydrolase activity. Disrupting the LAMP-TMEM175 interaction alkalinizes the lysosomal pH and compromises the lysosomal hydrolytic function. In light of the ever-increasing importance of lysosomes to cellular physiology and diseases, our data have widespread implications for lysosomal biology.


  • Organizational Affiliation

    Department of Physiology, University of Texas Southwestern Medical Center, Dallas, TX, USA; Department of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Endosomal/lysosomal potassium channel TMEM175
A, B
504Homo sapiensMutation(s): 0 
Gene Names: TMEM175
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BSA9 (Homo sapiens)
Explore Q9BSA9 
Go to UniProtKB:  Q9BSA9
PHAROS:  Q9BSA9
GTEx:  ENSG00000127419 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BSA9
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Lysosome-associated membrane glycoprotein 1
C, D
417Homo sapiensMutation(s): 0 
Gene Names: LAMP1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P11279 (Homo sapiens)
Explore P11279 
Go to UniProtKB:  P11279
PHAROS:  P11279
GTEx:  ENSG00000185896 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP11279
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Health & Human Services (HHS)United StatesR35GM140892

Revision History  (Full details and data files)

  • Version 1.0: 2023-06-28
    Type: Initial release
  • Version 1.1: 2023-07-19
    Changes: Database references
  • Version 1.2: 2023-08-02
    Changes: Database references
  • Version 1.3: 2024-06-19
    Changes: Data collection