8FXD

Rubrerythrin from B. pseudomallei: manganese-bound

PDB DOI: https://doi.org/10.2210/pdb8FXD/pdb

Classification: OXIDOREDUCTASE
Organism(s): Burkholderia pseudomallei
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-01-24 Released: 2024-02-07
Deposition Author(s): Monteiro, D.C.F., Snell, M.E., Budziszewski, G.R., Bowman, S.E.J.
Funding Organization(s): National Science Foundation (NSF, United States), Other private

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.58 Å
R-Value Free: 0.175
R-Value Work: 0.148

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Rubrerythrin from B. pseudomallei: manganese-bound

Monteiro, D.C.F., Snell, M.E., Budziszewski, G.R., Bowman, S.E.J.

To be published.

Macromolecule Content

Total Structure Weight: 113.33 kDa
Atom Count: 7,475
Modelled Residue Count: 829
Deposited Residue Count: 1,014
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rubrerythrin	A B C [auth M] D [auth S] E [auth Y] A, B, C [auth M], D [auth S], E [auth Y], F [auth 5]	169	Burkholderia pseudomallei	Mutation(s): 0 Gene Names: BURPS1710b_A0924
UniProt
Find proteins for Q3JK21 (Burkholderia pseudomallei (strain 1710b)) Explore Q3JK21 Go to UniProtKB: Q3JK21
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q3JK21
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain J [auth B] SDF format, chain K [auth B] SDF format, chain N [auth M] SDF format, chain S [auth Y] SDF format, chain V [auth 5] SDF format, chain W [auth 5] MOL2 format, chain G [auth A] MOL2 format, chain J [auth B] MOL2 format, chain K [auth B] MOL2 format, chain N [auth M] MOL2 format, chain S [auth Y] MOL2 format, chain V [auth 5] MOL2 format, chain W [auth 5] mmCIF format, chain G [auth A] mmCIF format, chain J [auth B] mmCIF format, chain K [auth B] mmCIF format, chain N [auth M] mmCIF format, chain S [auth Y] mmCIF format, chain V [auth 5] mmCIF format, chain W [auth 5]	G [auth A] J [auth B] K [auth B] N [auth M] S [auth Y] G [auth A], J [auth B], K [auth B], N [auth M], S [auth Y], V [auth 5], W [auth 5]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Focus chain J [auth B] Focus chain K [auth B] Focus chain N [auth M] Focus chain S [auth Y] Focus chain V [auth 5] Focus chain W [auth 5] Interactions & Density Focus chain G [auth A] Focus chain J [auth B] Focus chain K [auth B] Focus chain N [auth M] Focus chain S [auth Y] Focus chain V [auth 5] Focus chain W [auth 5]
MN Query on MN Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain I [auth A] SDF format, chain L [auth B] SDF format, chain M [auth B] SDF format, chain O [auth M] SDF format, chain P [auth M] SDF format, chain Q [auth S] SDF format, chain R [auth S] SDF format, chain T [auth Y] SDF format, chain U [auth Y] SDF format, chain X [auth 5] SDF format, chain Y [auth 5] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] MOL2 format, chain L [auth B] MOL2 format, chain M [auth B] MOL2 format, chain O [auth M] MOL2 format, chain P [auth M] MOL2 format, chain Q [auth S] MOL2 format, chain R [auth S] MOL2 format, chain T [auth Y] MOL2 format, chain U [auth Y] MOL2 format, chain X [auth 5] MOL2 format, chain Y [auth 5] mmCIF format, chain H [auth A] mmCIF format, chain I [auth A] mmCIF format, chain L [auth B] mmCIF format, chain M [auth B] mmCIF format, chain O [auth M] mmCIF format, chain P [auth M] mmCIF format, chain Q [auth S] mmCIF format, chain R [auth S] mmCIF format, chain T [auth Y] mmCIF format, chain U [auth Y] mmCIF format, chain X [auth 5] mmCIF format, chain Y [auth 5]	H [auth A] I [auth A] L [auth B] M [auth B] O [auth M] H [auth A], I [auth A], L [auth B], M [auth B], O [auth M], P [auth M], Q [auth S], R [auth S], T [auth Y], U [auth Y], X [auth 5], Y [auth 5]	MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N		Interactions Focus chain H [auth A] Focus chain I [auth A] Focus chain L [auth B] Focus chain M [auth B] Focus chain O [auth M] Focus chain P [auth M] Focus chain Q [auth S] Focus chain R [auth S] Focus chain T [auth Y] Focus chain U [auth Y] Focus chain X [auth 5] Focus chain Y [auth 5] Interactions & Density Focus chain H [auth A] Focus chain I [auth A] Focus chain L [auth B] Focus chain M [auth B] Focus chain O [auth M] Focus chain P [auth M] Focus chain Q [auth S] Focus chain R [auth S] Focus chain T [auth Y] Focus chain U [auth Y] Focus chain X [auth 5] Focus chain Y [auth 5]