8EM6 | pdb_00008em6

Bacteriophage HRP29 Procapsid Icosohedral Reconstruction

PDB DOI: https://doi.org/10.2210/pdb8EM6/pdb
EM Map EMD-28238: EMDB EMDataResource

Classification: VIRUS
Organism(s): Shigella phage Buco
Mutation(s): No

Deposited: 2022-09-26 Released: 2023-09-27
Deposition Author(s): Subramanian, S., Bergland Drarvik, S.M., Parent, K.N.
Funding Organization(s): National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS), National Science Foundation (NSF, United States)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 8EM6

This is version 1.0 of the entry. See complete history.

Literature

Structure of Shigella bacteriophage HRP29

Subramanian, S., Bergland Drarvik, S.M., Parent, K.N.

To be published.

Macromolecule Content

Total Structure Weight: 258.38 kDa
Atom Count: 15,593
Modeled Residue Count: 2,128
Deposited Residue Count: 2,317
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gp37	A, B, C, D, E A, B, C, D, E, F, G	331	Shigella phage Buco	Mutation(s): 0
UniProt
Find proteins for A0A482JKU4 (Shigella phage Buco) Explore A0A482JKU4 Go to UniProtKB: A0A482JKU4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A482JKU4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	RELION

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-09-27

Deposition Author(s):

Subramanian, S.

Bergland Drarvik, S.M.

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM110185
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM116789
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	GM140803
National Science Foundation (NSF, United States)	United States	1750125

Revision History (Full details and data files)

Version 1.0: 2023-09-27
Type: Initial release

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.