Machine-learning analysis of molecular dynamics simulations to elucidate the effect of strain and preorganization on conformational modes of motion in cyclic peptides
Muellers, S.N., Allen, K.N., Whitty, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Kelch-like ECH-associated protein 1 | 336 | Homo sapiens | Mutation(s): 3  Gene Names: KEAP1, INRF2, KIAA0132, KLHL19 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q14145 (Homo sapiens) Explore Q14145  Go to UniProtKB:  Q14145 | |||||
PHAROS:  Q14145 GTEx:  ENSG00000079999  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q14145 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
cyclic peptide c[DhA-GDPET(bAla)E | C [auth P] | 7 | synthetic construct | Mutation(s): 0  | |
Sequence AnnotationsExpand | |||||
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Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
B3A Query on B3A | C [auth P] | L-PEPTIDE LINKING | C4 H9 N O2 | ALA |
Length ( Å ) | Angle ( ˚ ) |
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a = 162.349 | α = 90 |
b = 68.849 | β = 117.63 |
c = 77.215 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
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Not funded | -- |