8ECY

cryoEM structure of bovine bestrophin-2 and glutamine synthetase complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Bestrophin-2 and glutamine synthetase form a complex for glutamate release.

Owji, A.P.Yu, K.Kittredge, A.Wang, J.Zhang, Y.Yang, T.

(2022) Nature 611: 180-187

  • DOI: https://doi.org/10.1038/s41586-022-05373-x
  • Primary Citation of Related Structures:  
    8ECY

  • PubMed Abstract: 

    Bestrophin-2 (BEST2) is a member of the bestrophin family of calcium-activated anion channels that has a critical role in ocular physiology 1-4 . Here we uncover a directional permeability of BEST2 to glutamate that heavily favours glutamate exit, identify glutamine synthetase (GS) as a binding partner of BEST2 in the ciliary body of the eye, and solve the structure of the BEST2-GS complex. BEST2 reduces cytosolic GS activity by tethering GS to the cell membrane. GS extends the ion conducting pathway of BEST2 through its central cavity and inhibits BEST2 channel function in the absence of intracellular glutamate, but sensitizes BEST2 to intracellular glutamate, which promotes the opening of BEST2 and thus relieves the inhibitory effect of GS. We demonstrate the physiological role of BEST2 in conducting chloride and glutamate and the influence of GS in non-pigmented ciliary epithelial cells. Together, our results reveal a novel mechanism of glutamate release through BEST2-GS.


  • Organizational Affiliation

    Department of Ophthalmology, Columbia University, New York, NY, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
BestrophinA [auth E],
B [auth C],
C [auth G],
D [auth K],
E [auth N]
410Bos taurusMutation(s): 0 
Gene Names: BEST2
Membrane Entity: Yes 
UniProt
Find proteins for E1BF86 (Bos taurus)
Explore E1BF86 
Go to UniProtKB:  E1BF86
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE1BF86
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Glutamine synthetase373Bos taurusMutation(s): 0 
Gene Names: GLUL
EC: 6.3.1.2 (PDB Primary Data), 2.3.1.225 (PDB Primary Data)
Membrane Entity: Yes 
UniProt
Find proteins for P15103 (Bos taurus)
Explore P15103 
Go to UniProtKB:  P15103
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15103
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MN
Query on MN

Download Ideal Coordinates CCD File 
BA [auth L]
CA [auth L]
EA [auth Q]
FA [auth Q]
HA [auth H]
BA [auth L],
CA [auth L],
EA [auth Q],
FA [auth Q],
HA [auth H],
IA [auth H],
KA [auth D],
LA [auth D],
NA [auth B],
OA [auth B],
QA [auth F],
RA [auth F],
TA [auth I],
UA [auth I],
V [auth A],
W [auth A],
WA [auth M],
XA [auth M],
Y [auth J],
Z [auth J]
MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
CA (Subject of Investigation/LOI)
Query on CA

Download Ideal Coordinates CCD File 
P [auth E],
Q [auth C],
S [auth G],
T [auth K],
U [auth N]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
CL (Subject of Investigation/LOI)
Query on CL

Download Ideal Coordinates CCD File 
AA [auth J]
DA [auth L]
GA [auth Q]
JA [auth H]
MA [auth D]
AA [auth J],
DA [auth L],
GA [auth Q],
JA [auth H],
MA [auth D],
PA [auth B],
R [auth C],
SA [auth F],
VA [auth I],
X [auth A],
YA [auth M]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Eye Institute (NIH/NEI)United States5F31EY030763
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States5R01GM127652

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-02
    Type: Initial release
  • Version 1.1: 2022-11-09
    Changes: Database references
  • Version 1.2: 2022-11-16
    Changes: Database references
  • Version 1.3: 2024-06-19
    Changes: Data collection