Cryo-EM structure of substrate-free DNClpX.ClpP
Ghanbarpour, A., Cohen, S., Davis, J.H., Sauer, R.T.(2023) Nat Commun 
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
(2023) Nat Commun 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ATP-dependent Clp protease ATP-binding subunit ClpX | 388 | Escherichia coli | Mutation(s): 2  Gene Names: clpX, lopC, b0438, JW0428 | ||
UniProt | |||||
Find proteins for P0A6H1 (Escherichia coli (strain K12)) Explore P0A6H1  Go to UniProtKB:  P0A6H1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A6H1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
ATP-dependent Clp protease proteolytic subunit | 207 | Escherichia coli | Mutation(s): 0  Gene Names: clpP, lopP, b0437, JW0427 EC: 3.4.21.92 | ||
UniProt | |||||
Find proteins for P0A6G7 (Escherichia coli (strain K12)) Explore P0A6G7  Go to UniProtKB:  P0A6G7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A6G7 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ATP Query on ATP | U [auth A], V [auth B], X [auth C], Z [auth D] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N | |||
ADP Query on ADP | BA [auth E], CA [auth F] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
MG Query on MG | AA [auth D], W [auth B], Y [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | -- |