8DXP

Structure of LRRC8C-LRRC8A(IL125) Chimera, Class 3


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structures of a LRRC8 chimera with native functional properties reveal heptameric assembly.

Takahashi, H.Yamada, T.Denton, J.S.Strange, K.Karakas, E.

(2023) Elife 12

  • DOI: https://doi.org/10.7554/eLife.82431
  • Primary Citation of Related Structures:  
    8DXN, 8DXO, 8DXP, 8DXQ, 8DXR

  • PubMed Abstract: 

    Volume-regulated anion channels (VRACs) mediate volume regulatory Cl - and organic solute efflux from vertebrate cells. VRACs are heteromeric assemblies of LRRC8A-E proteins with unknown stoichiometries. Homomeric LRRC8A and LRRC8D channels have a small pore, hexameric structure. However, these channels are either non-functional or exhibit abnormal regulation and pharmacology, limiting their utility for structure-function analyses. We circumvented these limitations by developing novel homomeric LRRC8 chimeric channels with functional properties consistent with those of native VRAC/LRRC8 channels. We demonstrate here that the LRRC8C-LRRC8A(IL1 25 ) chimera comprising LRRC8C and 25 amino acids unique to the first intracellular loop (IL1) of LRRC8A has a heptameric structure like that of homologous pannexin channels. Unlike homomeric LRRC8A and LRRC8D channels, heptameric LRRC8C-LRRC8A(IL1 25 ) channels have a large-diameter pore similar to that estimated for native VRACs, exhibit normal DCPIB pharmacology, and have higher permeability to large organic anions. Lipid-like densities are located between LRRC8C-LRRC8A(IL1 25 ) subunits and occlude the channel pore. Our findings provide new insights into VRAC/LRRC8 channel structure and suggest that lipids may play important roles in channel gating and regulation.


  • Organizational Affiliation

    Department of Molecular Physiology and Biophysics, School of Medicine, Vanderbilt University, Nashville, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Volume-regulated anion channel subunit LRRC8C,Volume-regulated anion channel subunit LRRC8A
A, B, C, D, E
A, B, C, D, E, F, G
825Homo sapiensMutation(s): 0 
Gene Names: LRRC8CAD158FAD158LRRC8AKIAA1437LRRC8SWELL1UNQ221/PRO247
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TDW0 (Homo sapiens)
Explore Q8TDW0 
Go to UniProtKB:  Q8TDW0
PHAROS:  Q8TDW0
GTEx:  ENSG00000171488 
Find proteins for Q8IWT6 (Homo sapiens)
Explore Q8IWT6 
Go to UniProtKB:  Q8IWT6
PHAROS:  Q8IWT6
GTEx:  ENSG00000136802 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsQ8IWT6Q8TDW0
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesDK51610

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-22
    Type: Initial release
  • Version 1.1: 2024-10-30
    Changes: Data collection, Structure summary