Download MendeleyCrystal Structure of a Dephospho-CoA kinase from Rickettsia felis
Mayclin, S.J., Abendroth, J., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
8DV0
Crystal Structure of a Dephospho-CoA kinase from Rickettsia felis
- PDB DOI: https://doi.org/10.2210/pdb8DV0/pdb
- Classification: TRANSFERASE
- Organism(s): Rickettsia felis URRWXCal2
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-07-27 Released: 2022-09-28
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.199
- R-Value Work: 0.156
- R-Value Observed: 0.159
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dephospho-CoA kinase | 199 | Rickettsia felis URRWXCal2 | Mutation(s): 0 Gene Names: coaE, RF_0177 EC: 2.7.1.24 |  | |
UniProt | |||||
Find proteins for Q4UN30 (Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)) Explore Q4UN30 Go to UniProtKB: Q4UN30 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q4UN30 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | B [auth A], E [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| EDO Query on EDO | C [auth A], D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.199
- R-Value Work: 0.156
- R-Value Observed: 0.159
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 35.13 | α = 107.05 |
| b = 39.68 | β = 106.87 |
| c = 42.85 | γ = 108.3 |
| Software Name | Purpose |
|---|---|
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| MR-Rosetta | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-09-28 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
Revision History (Full details and data files)
- Version 1.0: 2022-09-28
Type: Initial release - Version 1.1: 2023-10-18
Changes: Data collection, Refinement description
