Crystal structure of GDP bound 3-dehydroquinate dehydratase I from Klebsiella oxytoca
Liu, L., Seibold, S., Battaile, K.P., Lovell, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
3-dehydroquinate dehydratase I | 375 | Klebsiella oxytoca | Mutation(s): 0  | ||
UniProt | |||||
Find proteins for A0A0H3FX83 (Klebsiella aerogenes (strain ATCC 13048 / DSM 30053 / CCUG 1429 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006 / CDC 819-56)) Explore A0A0H3FX83  Go to UniProtKB:  A0A0H3FX83 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0H3FX83 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GDP (Subject of Investigation/LOI) Query on GDP | G [auth B] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N | |||
ZN (Subject of Investigation/LOI) Query on ZN | D [auth A], F [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
CL Query on CL | C [auth A], E [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 74.342 | α = 90 |
b = 89.761 | β = 90 |
c = 223.744 | γ = 90 |
Software Name | Purpose |
---|---|
XDS | data reduction |
Aimless | data scaling |
PHASER | phasing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
---|---|---|
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700059C |
National Institutes of Health/Office of the Director | United States | S10OD030394 |