8DJ6 | pdb_00008dj6

Sliding-clamp-ImuB peptide

PDB DOI: https://doi.org/10.2210/pdb8DJ6/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Mycolicibacterium thermoresistibile ATCC 19527
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-06-30 Released: 2023-07-26
Deposition Author(s): Kapur, M.K., Gray, O.J., Honzatko, R.H., Nelson, S.N.
Funding Organization(s): Other government

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.226 (Depositor), 0.224 (DCC)
R-Value Work:
0.200 (Depositor), 0.203 (DCC)
R-Value Observed:
0.200 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Interaction of sliding clamp with mycobacterial polymerases

Kapur, M.K., Gray, O.J., Honzatko, R.H., Nelson, S.N.

To be published.

Macromolecule Content

Total Structure Weight: 170.04 kDa
Atom Count: 12,155
Modeled Residue Count: 1,586
Deposited Residue Count: 1,620
Unique protein chains: 2

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta sliding clamp	A, B [auth C], C [auth B], D	397	Mycolicibacterium thermoresistibile ATCC 19527	Mutation(s): 0 Gene Names: KEK_10778
UniProt
Find proteins for G7CIP4 (Mycolicibacterium thermoresistibile (strain ATCC 19527 / DSM 44167 / CIP 105390 / JCM 6362 / NCTC 10409 / 316)) Explore G7CIP4 Go to UniProtKB: G7CIP4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	G7CIP4
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Imub-peptide	E, F, G, H	8	Mycolicibacterium thermoresistibile ATCC 19527	Mutation(s): 0

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACT Query on ACT Download:Ideal Coordinates CCD File SDF format, chain O [auth B] MOL2 format, chain O [auth B] mmCIF format, chain O [auth B]	O [auth B]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain O [auth B] Interactions & Density Focus chain O [auth B]
FMT Query on FMT Download:Ideal Coordinates CCD File SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain K [auth C] SDF format, chain L [auth B] SDF format, chain M [auth B] SDF format, chain N [auth B] SDF format, chain P [auth D] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain K [auth C] MOL2 format, chain L [auth B] MOL2 format, chain M [auth B] MOL2 format, chain N [auth B] MOL2 format, chain P [auth D] mmCIF format, chain I [auth A] mmCIF format, chain J [auth A] mmCIF format, chain K [auth C] mmCIF format, chain L [auth B] mmCIF format, chain M [auth B] mmCIF format, chain N [auth B] mmCIF format, chain P [auth D]	I [auth A] J [auth A] K [auth C] L [auth B] M [auth B] I [auth A], J [auth A], K [auth C], L [auth B], M [auth B], N [auth B], P [auth D]	FORMIC ACID C H₂ O₂ BDAGIHXWWSANSR-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth C] Focus chain L [auth B] Focus chain M [auth B] Focus chain N [auth B] Focus chain P [auth D] Interactions & Density Focus chain I [auth A] Focus chain J [auth A] Focus chain K [auth C] Focus chain L [auth B] Focus chain M [auth B] Focus chain N [auth B] Focus chain P [auth D]