8DFX | pdb_00008dfx

Crystal structure of Human BTN2A1-BTN3A1 Ectodomain Complex

• PDB DOI: https://doi.org/10.2210/pdb8DFX/pdb

• Classification: IMMUNE SYSTEM
• Organism(s): Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2022-06-22 Released: 2023-07-05 
• Deposition Author(s): Fulford, T.S., Soliman, C., Castle, R.G., Rigau, M., Ruan, Z., Dolezal, O., Seneviratna, R., Brown, H.G., Hanssen, E., Hammet, A., Li, S., Redmond, S.J., Chung, A., Gorman, M.A., Parker, M.W., Patel, O., Peat, T.S., Newman, J., Behren, A., Gherardin, N.A., Godfrey, D.I., Uldrich, A.P.
• Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 5.55 Å
• R-Value Free: 
  0.336 (Depositor) 
• R-Value Work: 
  0.290 (Depositor) 
• R-Value Observed: 
  0.294 (Depositor) 

Starting Model: experimental

Literature

Vgamma9-Vdelta2 T cells recognize butyrophilin 2A1 and 3A1 heteromers

Fulford, T.S., Soliman, C., Castle, R.G., Rigau, M., Ruan, Z., Dolezal, O., Seneviratna, R., Brown, H.G., Hanssen, E., Hammet, A., Li, S., Redmond, S.J., Chung, A., Gorman, M.A., Parker, M.W., Patel, O., Peat, T.S., Newman, J., Behren, A., Gherardin, N.A., Godfrey, D.I., Uldrich, A.P.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: surface plasmon resonance, fluorescence resonance energy transfer

Macromolecule Content 

• Total Structure Weight: 58.89 kDa 
• Atom Count: 3,305 
• Modeled Residue Count: 425 
• Deposited Residue Count: 527 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Butyrophilin subfamily 2 member A1	A	226	Homo sapiens	Mutation(s): 0  Gene Names: BTN2A1, BT2.1, BTF1
UniProt & NIH Common Fund Data Resources
Find proteins for Q7KYR7 (Homo sapiens) Explore Q7KYR7  Go to UniProtKB:  Q7KYR7
PHAROS:  Q7KYR7 GTEx:  ENSG00000112763
Glycosylation
Glycosylation Sites: 1		Go to GlyGen: Q7KYR7-2

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Butyrophilin subfamily 3 member A1	B	301	Homo sapiens	Mutation(s): 0  Gene Names: BTN3A1, BTF5
UniProt & NIH Common Fund Data Resources
Find proteins for O00481 (Homo sapiens) Explore O00481  Go to UniProtKB:  O00481
PHAROS:  O00481 GTEx:  ENSG00000026950

Oligosaccharides

Help  

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	C	2		N-Glycosylation
Glycosylation Resources
GlyTouCan: G42666HT GlyCosmos: G42666HT GlyGen: G42666HT

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 5.55 Å
• R-Value Free:  0.336 (Depositor) 
• R-Value Work:  0.290 (Depositor) 
• R-Value Observed: 0.294 (Depositor) 

Space Group: F 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 114.63	α = 90
b = 138.93	β = 90
c = 336.2	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
STARANISO	data scaling
PHASER	phasing
BUSTER	refinement

Structure Validation

Currently 8DFX does not have a validation slider image.

Entry History 

& Funding Information

Deposition Data

• Released Date: 2023-07-05 
Deposition Author(s): Fulford, T.S., Soliman, C., Castle, R.G., Rigau, M., Ruan, Z., Dolezal, O., Seneviratna, R., Brown, H.G., Hanssen, E., Hammet, A., Li, S., Redmond, S.J., Chung, A., Gorman, M.A., Parker, M.W., Patel, O., Peat, T.S., Newman, J., Behren, A., Gherardin, N.A., Godfrey, D.I., Uldrich, A.P.

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Funding Organization	Location	Grant Number
National Health and Medical Research Council (NHMRC, Australia)	Australia	1184906

Revision History  

• Version 1.0: 2023-07-05
  Type: Initial release
  
• Version 1.1: 2023-10-25
  Changes: Data collection, Refinement description
• Version 1.2: 2024-11-13
  Changes: Structure summary