SAMHD1-DNA complex
Hollis, T.J., Batalis, S.M.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 | 626 | Homo sapiens | Mutation(s): 0  Gene Names: SAMHD1, MOP5 EC: 3.1.5 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9Y3Z3 (Homo sapiens) Explore Q9Y3Z3  Go to UniProtKB:  Q9Y3Z3 | |||||
PHAROS:  Q9Y3Z3 GTEx:  ENSG00000101347  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9Y3Z3 | ||||
Sequence AnnotationsExpand | |||||
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Find similar nucleic acids by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (5'-D(P*TP*GP*T)-3') | E [auth F], F [auth G], G [auth H], H [auth I] | 5 | synthetic construct | ![]() | |
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FE (Subject of Investigation/LOI) Query on FE | I [auth A], K [auth B], M [auth C], O [auth D] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N | |||
CA (Subject of Investigation/LOI) Query on CA | J [auth A], L [auth B], N [auth C], P [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 75.116 | α = 90 |
b = 179.936 | β = 108.95 |
c = 79.792 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | GM108827A |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | T32-GM095440 |
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | T32-AI007401 |
National Institutes of Health/National Cancer Institute (NIH/NCI) | United States | P30CA012197-47 |