8CYW

CryoEM structures of amplified alpha-synuclein fibril class B type I with compact core from DLB case III

PDB DOI: https://doi.org/10.2210/pdb8CYW/pdb
EM Map EMD-27086: EMDB EMDataResource

Classification: PROTEIN FIBRIL
Organism(s): Homo sapiens
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): No

Deposited: 2022-05-24 Released: 2023-05-31
Deposition Author(s): Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.
Funding Organization(s): Michael J. Fox Foundation

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural and functional landscape of alpha-synuclein fibril assemblies amplified from cerebrospinal fluid

Zhou, Y., Sokratian, A., Xu, E., Viverette, E., Dillard, L., Yuan, Y., Li, J.Y., Matarangas, A., Bouvette, J., Borgnia, M., Bartesaghi, A., West, A.

To be published.

Macromolecule Content

Total Structure Weight: 173.71 kDa
Atom Count: 5,952
Modelled Residue Count: 876
Deposited Residue Count: 1,680
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Alpha-synuclein	A B [auth D] C D [auth B] E [auth L] A, B [auth D], C, D [auth B], E [auth L], F [auth K], G [auth J], H [auth I], I [auth F], J [auth E], K [auth N], L [auth M]	140	Homo sapiens	Mutation(s): 0 Gene Names: SNCA, NACP, PARK1
UniProt & NIH Common Fund Data Resources
Find proteins for P37840 (Homo sapiens) Explore P37840 Go to UniProtKB: P37840
PHAROS: P37840 GTEx: ENSG00000145335
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P37840
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.10 Å
Aggregation State: FILAMENT
Reconstruction Method: HELICAL

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-05-31

Deposition Author(s):

Funding Organization	Location	Grant Number
Michael J. Fox Foundation	United States	--

Revision History (Full details and data files)

Version 1.0: 2023-05-31
Type: Initial release
Version 1.1: 2024-06-12
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.