8CMV | pdb_00008cmv

Engineered PETase enzyme from LCC - C09 mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 
    0.187 (Depositor), 0.187 (DCC) 
  • R-Value Work: 
    0.163 (Depositor), 0.164 (DCC) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history

Literature

Development of a highly active engineered PETase enzyme for polyester degradation.

Bhattacharya, S.Castagna, R.Estiri, H.Upmanis, T.Ricci, A.Gautieri, A.Parisini, E.

(2026) FEBS J 293: 443-455

  • DOI: https://doi.org/10.1111/febs.70228
  • Primary Citation Related Structures: 
    8CMV

  • PubMed Abstract: 

    Polyethylene terephthalate (PET) accounts for ≈6% of global plastic production, contributing considerably to the global solid-waste stream and environmental plastic pollution. Since the discovery of PET-depolymerizing enzymes, enzymatic PET recycling has been regarded as a promising method for plastic disposal, particularly in the context of a circular economy strategy. However, because the PET-degrading enzymes developed so far suffer from relatively limited thermostability and low catalytic efficiency, as well as degradation product inhibition, their large-scale industrial applications are still largely hampered. To overcome these limitations, we engineered the current PET-hydrolyzing enzyme gold standard [the ICCG variant of leaf-branch compost cutinase (LCC-ICCG)] using in silico protein design methods to develop a PET-hydrolyzing enzyme that features enhanced thermal stability and PET depolymerization activity. Our mutant, LCC-ICCG-C09, features a 3.5 °C increase in melting temperature relative to the LCC-ICCG enzyme. Under optimal reaction conditions (68 °C), the engineered enzyme hydrolyzes amorphous PET material into terephthalic acid (TPA) with a two-fold higher efficiency compared to LCC-ICCG. Owing to its enhanced properties, LCC-ICCG-C09 may be a promising candidate for future applications in industrial PET recycling processes.


  • Organizational Affiliation
    • Department of Biotechnology, Latvian Institute of Organic Synthesis, Riga, Latvia.

Macromolecule Content 

  • Total Structure Weight: 33.19 kDa 
  • Atom Count: 2,285 
  • Modeled Residue Count: 258 
  • Deposited Residue Count: 301 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Leaf-branch compost cutinase301unidentified prokaryotic organismMutation(s): 1 
EC: 3.1.1.74 (PDB Primary Data), 3.1.1.101 (PDB Primary Data)
UniProt
Find proteins for G9BY57 (Unknown prokaryotic organism)
Explore G9BY57 
Go to UniProtKB:  G9BY57
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG9BY57
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free:  0.187 (Depositor), 0.187 (DCC) 
  • R-Value Work:  0.163 (Depositor), 0.164 (DCC) 
Space Group: P 63
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 108.876α = 90
b = 108.876β = 90
c = 35.402γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MLPHAREphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other governmentLatvialzp-2020/2-0013

Revision History  (Full details and data files)

  • Version 1.0: 2024-03-06
    Type: Initial release
  • Version 1.1: 2024-09-25
    Changes: Database references
  • Version 1.2: 2024-11-13
    Changes: Structure summary
  • Version 1.3: 2026-02-18
    Changes: Database references