Cryo EM structure of the vaccinia complete RNA polymerase complex lacking the capping enzyme
Grimm, G., Bartuli, J., Fischer, U.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 133 kDa polypeptide | A [auth B] | 1,164 | Vaccinia virus GLV-1h68 | Mutation(s): 1  EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for Q76ZP7 (Vaccinia virus (strain Western Reserve)) Explore Q76ZP7  Go to UniProtKB:  Q76ZP7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q76ZP7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 22 kDa subunit | B [auth E] | 185 | Vaccinia virus GLV-1h68 | Mutation(s): 0  EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P68609 (Vaccinia virus (strain Western Reserve)) Explore P68609  Go to UniProtKB:  P68609 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68609 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 19 kDa subunit | C [auth F] | 164 | Vaccinia virus GLV-1h68 | Mutation(s): 0  EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P68611 (Vaccinia virus (strain Western Reserve)) Explore P68611  Go to UniProtKB:  P68611 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68611 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 18 kDa subunit | D [auth G] | 161 | Vaccinia virus GLV-1h68 | Mutation(s): 1  EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P04310 (Vaccinia virus (strain Western Reserve)) Explore P04310  Go to UniProtKB:  P04310 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04310 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
RNA polymerase-associated transcription-specificity factor RAP94 | E [auth I] | 795 | Vaccinia virus GLV-1h68 | Mutation(s): 2  | |
UniProt | |||||
Find proteins for P68438 (Vaccinia virus (strain Western Reserve)) Explore P68438  Go to UniProtKB:  P68438 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68438 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 7 kDa subunit | F [auth J] | 63 | Vaccinia virus GLV-1h68 | Mutation(s): 0  EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P68317 (Vaccinia virus (strain Western Reserve)) Explore P68317  Go to UniProtKB:  P68317 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68317 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Core protein E11 | G [auth R], K [auth Q] | 129 | Vaccinia virus GLV-1h68 | Mutation(s): 0  | |
UniProt | |||||
Find proteins for P68448 (Vaccinia virus (strain Western Reserve)) Explore P68448  Go to UniProtKB:  P68448 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P68448 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Early transcription factor 82 kDa subunit | H [auth K] | 710 | Vaccinia virus GLV-1h68 | Mutation(s): 1  | |
UniProt | |||||
Find proteins for P20636 (Vaccinia virus (strain Western Reserve)) Explore P20636  Go to UniProtKB:  P20636 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P20636 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 147 kDa polypeptide | J [auth A] | 1,286 | Vaccinia virus GLV-1h68 | Mutation(s): 10  EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P07392 (Vaccinia virus (strain Western Reserve)) Explore P07392  Go to UniProtKB:  P07392 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P07392 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Nucleoside triphosphatase I | L [auth Y] | 631 | Vaccinia virus GLV-1h68 | Mutation(s): 3  EC: 3.6.1.15 | |
UniProt | |||||
Find proteins for P05807 (Vaccinia virus (strain Western Reserve)) Explore P05807  Go to UniProtKB:  P05807 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P05807 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 35 kDa subunit | M [auth C] | 305 | Vaccinia virus GLV-1h68 | Mutation(s): 1  EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P24757 (Vaccinia virus (strain Western Reserve)) Explore P24757  Go to UniProtKB:  P24757 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P24757 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA-directed RNA polymerase 30 kDa polypeptide | N [auth S] | 259 | Vaccinia virus GLV-1h68 | Mutation(s): 1  EC: 2.7.7.6 | |
UniProt | |||||
Find proteins for P21603 (Vaccinia virus (strain Western Reserve)) Explore P21603  Go to UniProtKB:  P21603 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P21603 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Length | Organism | Image | |
chr17.trna16-GlnTTG | I [auth U] | 72 | Vaccinia virus GLV-1h68 | ||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | O [auth B], P [auth I], R [auth A], S [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | Q [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
SEP Query on SEP | N [auth S] | L-PEPTIDE LINKING | C3 H8 N O6 P | SER |
Funding Organization | Location | Grant Number |
---|---|---|
German Research Foundation (DFG) | Germany | Fi573/23-1 |
Volkswagen Foundation | Germany | 9B813 |