Download Mendeley14-3-3/Pyrin complex
Ottmann, C., Lau, R.To be published.
8C30
Crystal structure of 14-3-3 in complex with PyrinpS242 and a protein/peptide interface fragment
- PDB DOI: https://doi.org/10.2210/pdb8C30/pdb
- Classification: PROTEIN BINDING
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-12-23 Released: 2024-01-10
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.204
- R-Value Work: 0.179
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 14-3-3 protein sigma | A [auth AAA] | 236 | Homo sapiens | Mutation(s): 0 Gene Names: SFN, HME1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P31947 (Homo sapiens) Explore P31947 Go to UniProtKB: P31947 | |||||
PHAROS: P31947 GTEx: ENSG00000175793 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P31947 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Pyrin | B [auth PPP] | 12 | Homo sapiens | Mutation(s): 0 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O15553 (Homo sapiens) Explore O15553 Go to UniProtKB: O15553 | |||||
PHAROS: O15553 GTEx: ENSG00000103313 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O15553 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PE5 Query on PE5 | D [auth AAA] | 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL C18 H38 O9 CUDPPTPIUWYGFI-UHFFFAOYSA-N |  | ||
| 463 (Subject of Investigation/LOI) Query on 463 | C [auth AAA] | N-[3-(aminomethyl)phenyl]acetamide C9 H12 N2 O JLFWORHZSACMOG-UHFFFAOYSA-N |  | ||
| CA Query on CA | F [auth AAA] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
| MG Query on MG | E [auth AAA] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CSO Query on CSO | A [auth AAA] | L-PEPTIDE LINKING | C3 H7 N O3 S |  | CYS |
| SEP Query on SEP | B [auth PPP] | L-PEPTIDE LINKING | C3 H8 N O6 P |  | SER |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.204
- R-Value Work: 0.179
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 82.142 | α = 90 |
| b = 111.969 | β = 90 |
| c = 62.477 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| DIALS | data reduction |
| DIALS | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-01-10 Deposition Author(s): Lau, R., Ottmann, C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-01-10
Type: Initial release - Version 1.1: 2024-11-06
Changes: Structure summary
