8BX7

Structure of the rod CNG channel bound to calmodulin


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.76 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of calmodulin modulation of the rod cyclic nucleotide-gated channel.

Barret, D.C.A.Schuster, D.Rodrigues, M.J.Leitner, A.Picotti, P.Schertler, G.F.X.Kaupp, U.B.Korkhov, V.M.Marino, J.

(2023) Proc Natl Acad Sci U S A 120: e2300309120-e2300309120

  • DOI: https://doi.org/10.1073/pnas.2300309120
  • Primary Citation of Related Structures:  
    8BX7

  • PubMed Abstract: 

    Calmodulin (CaM) regulates many ion channels to control calcium entry into cells, and mutations that alter this interaction are linked to fatal diseases. The structural basis of CaM regulation remains largely unexplored. In retinal photoreceptors, CaM binds to the CNGB subunit of cyclic nucleotide-gated (CNG) channels and, thereby, adjusts the channel's Cyclic guanosine monophosphate (cGMP) sensitivity in response to changes in ambient light conditions. Here, we provide the structural characterization for CaM regulation of a CNG channel by using a combination of single-particle cryo-electron microscopy and structural proteomics. CaM connects the CNGA and CNGB subunits, resulting in structural changes both in the cytosolic and transmembrane regions of the channel. Cross-linking and limited proteolysis-coupled mass spectrometry mapped the conformational changes induced by CaM in vitro and in the native membrane. We propose that CaM is a constitutive subunit of the rod channel to ensure high sensitivity in dim light. Our mass spectrometry-based approach is generally relevant for studying the effect of CaM on ion channels in tissues of medical interest, where only minute quantities are available.


  • Organizational Affiliation

    Laboratory of Biomolecular Research, Paul Scherrer Institute, 5232 Villigen, Switzerland.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cyclic nucleotide-gated cation channel beta-1A [auth D]1,394Bos taurusMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q28181 (Bos taurus)
Explore Q28181 
Go to UniProtKB:  Q28181
Entity Groups  
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UniProt GroupQ28181
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
cGMP-gated cation channel alpha-1B [auth A],
C [auth B],
D [auth C]
690Bos taurusMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q00194 (Bos taurus)
Explore Q00194 
Go to UniProtKB:  Q00194
Entity Groups  
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UniProt GroupQ00194
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
calmodulin-1149Bos taurusMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.76 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC3.3.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2023-04-12 
  • Deposition Author(s): Marino, J.

Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland19082

Revision History  (Full details and data files)

  • Version 1.0: 2023-04-12
    Type: Initial release
  • Version 1.1: 2024-07-24
    Changes: Data collection