Download MendeleyA small G protein with MgF3 TSA complex
Baumann, P., Jin, Y.To be published.
8BOS | pdb_00008bos
Transition state analogue complex of small G protein and its GAP effector
- PDB DOI: https://doi.org/10.2210/pdb8BOS/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2022-11-15 Released: 2023-11-29
- Funding Organization(s): Wellcome Trust
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.280 (Depositor), 0.290 (DCC)
- R-Value Work: 0.198 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.202 (Depositor)
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GTPase HRas | A [auth R] | 166 | Homo sapiens | Mutation(s): 0 Gene Names: HRAS, HRAS1 EC: 3.6.5.2 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01112 (Homo sapiens) Explore P01112 Go to UniProtKB: P01112 | |||||
PHAROS: P01112 GTEx: ENSG00000174775 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P01112 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ras GTPase-activating protein 1 | B [auth G] | 331 | Homo sapiens | Mutation(s): 0 Gene Names: RASA1, GAP, RASA |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P20936 (Homo sapiens) Explore P20936 Go to UniProtKB: P20936 | |||||
PHAROS: P20936 GTEx: ENSG00000145715 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P20936 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDP (Subject of Investigation/LOI) Query on GDP | C [auth R] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |  | ||
| MGF (Subject of Investigation/LOI) Query on MGF | D [auth R] | TRIFLUOROMAGNESATE F3 Mg GJOMWUHGUQLOAC-UHFFFAOYSA-K |  | ||
| GAI Query on GAI | F [auth G] | GUANIDINE C H5 N3 ZRALSGWEFCBTJO-UHFFFAOYSA-N |  | ||
| MG (Subject of Investigation/LOI) Query on MG | E [auth R] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.280 (Depositor), 0.290 (DCC)
- R-Value Work: 0.198 (Depositor), 0.210 (DCC)
- R-Value Observed: 0.202 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 71.832 | α = 90 |
| b = 41.558 | β = 109.25 |
| c = 89.674 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| Coot | model building |
| Aimless | data scaling |
| MOLREP | phasing |
| xia2 | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-11-29 Deposition Author(s): Baumann, P., Jin, Y.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Wellcome Trust | United Kingdom | 218568/Z/19/Z |
| Wellcome Trust | United Kingdom | 209057/Z/17/Z |
Revision History (Full details and data files)
- Version 1.0: 2023-11-29
Type: Initial release - Version 1.1: 2024-11-13
Changes: Structure summary
