8BBI | pdb_00008bbi

Crystal structure of Xyn11 double mutant L271S, K275H from Psedothermotoga thermarum

PDB DOI: https://doi.org/10.2210/pdb8BBI/pdb

Classification: HYDROLASE
Organism(s): Pseudothermotoga thermarum DSM 5069
Expression System: Escherichia coli BL21(DE3)
Mutation(s): Yes

Deposited: 2022-10-13 Released: 2023-10-25
Deposition Author(s): Cea-Rama, I., Sanz-Aparicio, J.
Funding Organization(s): Spanish Ministry of Science, Innovation, and Universities

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.196 (Depositor), 0.203 (DCC)
R-Value Work:
0.161 (Depositor), 0.171 (DCC)
R-Value Observed:
0.163 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Xyn11 double mutant L271S, K275H from Pseudothermotoga thermarum

Cea-Rama, I., Sanz Aparicio, J.

To be published.

Macromolecule Content

Total Structure Weight: 87.45 kDa
Atom Count: 5,976
Modeled Residue Count: 669
Deposited Residue Count: 736
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-xylanase	A, B	368	Pseudothermotoga thermarum DSM 5069	Mutation(s): 2 Gene Names: Theth_1636 EC: 3.2.1.8
UniProt
Find proteins for F7YXD6 (Pseudothermotoga thermarum DSM 5069) Explore F7YXD6 Go to UniProtKB: F7YXD6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	F7YXD6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
IPT Query on IPT Download:Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain I [auth B] MOL2 format, chain F [auth A] MOL2 format, chain I [auth B] mmCIF format, chain F [auth A] mmCIF format, chain I [auth B]	F [auth A], I [auth B]	1-methylethyl 1-thio-beta-D-galactopyranoside C₉ H₁₈ O₅ S BPHPUYQFMNQIOC-NXRLNHOXSA-N		Interactions Focus chain F [auth A] Focus chain I [auth B] Interactions & Density Focus chain F [auth A] Focus chain I [auth B]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain G [auth B] SDF format, chain H [auth B] SDF format, chain J [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain G [auth B] MOL2 format, chain H [auth B] MOL2 format, chain J [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth A] mmCIF format, chain E [auth A] mmCIF format, chain G [auth B] mmCIF format, chain H [auth B] mmCIF format, chain J [auth B]	C [auth A] D [auth A] E [auth A] G [auth B] H [auth B] C [auth A], D [auth A], E [auth A], G [auth B], H [auth B], J [auth B]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain J [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A] Focus chain G [auth B] Focus chain H [auth B] Focus chain J [auth B]