8BAO | pdb_00008bao

Dysgonamonadaceae bacterium CRISPR ancillary nuclease 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 
    0.254 (Depositor), 0.254 (DCC) 
  • R-Value Work: 
    0.220 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 
    0.222 (Depositor) 

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Reverse transcriptases prime DNA synthesis.

Zabrady, M.Zabrady, K.Li, A.W.H.Doherty, A.J.

(2023) Nucleic Acids Res 51: 7125-7142

  • DOI: https://doi.org/10.1093/nar/gkad478
  • Primary Citation Related Structures: 
    8BAO, 8BGJ

  • PubMed Abstract: 

    The discovery of reverse transcriptases (RTs) challenged the central dogma by establishing that genetic information can also flow from RNA to DNA. Although they act as DNA polymerases, RTs are distantly related to replicases that also possess de novo primase activity. Here we identify that CRISPR associated RTs (CARTs) directly prime DNA synthesis on both RNA and DNA. We demonstrate that RT-dependent priming is utilized by some CRISPR-Cas complexes to synthesise new spacers and integrate these into CRISPR arrays. Expanding our analyses, we show that primer synthesis activity is conserved in representatives of other major RT classes, including group II intron RT, telomerase and retroviruses. Together, these findings establish a conserved innate ability of RTs to catalyse de novo DNA primer synthesis, independently of accessory domains or alternative priming mechanisms, which likely plays important roles in a wide variety of biological pathways.


  • Organizational Affiliation
    • Genome Damage and Stability Centre, School of Life Sciences, University of Sussex, Brighton BN1 9RQ, UK.

Macromolecule Content 

  • Total Structure Weight: 91 kDa 
  • Atom Count: 6,429 
  • Modeled Residue Count: 739 
  • Deposited Residue Count: 778 
  • Unique protein chains: 1
  • Unique nucleic acid chains: 1

Macromolecules


Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
DUF1887 family protein
A, B
387Dysgonamonadaceae bacteriumMutation(s): 0 
Gene Names: C0T31_04800
UniProt
Find proteins for A0ACD6BA57 (Dysgonamonadaceae bacterium)
Explore A0ACD6BA57 
Go to UniProtKB:  A0ACD6BA57
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0ACD6BA57
Sequence Annotations
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Reference Sequence
Find similar nucleic acids by:  Sequence
Entity ID: 2
MoleculeChains LengthOrganismImage
Cyclic tetra-adenylate (cA4)4synthetic construct
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free:  0.254 (Depositor), 0.254 (DCC) 
  • R-Value Work:  0.220 (Depositor), 0.220 (DCC) 
  • R-Value Observed: 0.222 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 155.133α = 90
b = 109.429β = 101.88
c = 63.043γ = 90
Software Package:
Software NamePurpose
autoPROCdata processing
XDSdata reduction
pointlessdata scaling
PHENIXrefinement
PHASERphasing
Cootmodel building

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/S008691/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/M008800/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/P007031/1

Revision History  (Full details and data files)

  • Version 1.0: 2022-11-30
    Type: Initial release
  • Version 1.1: 2023-07-19
    Changes: Data collection, Database references
  • Version 1.2: 2023-08-23
    Changes: Data collection, Database references
  • Version 1.3: 2024-05-01
    Changes: Refinement description