8B72 | pdb_00008b72

Crystal structure of 3-hydroxydecanoyl-acyl carrier protein dehydratase (FabA) from Pseudomonas aeruginosa in complex with Z30857828

PDB DOI: https://doi.org/10.2210/pdb8B72/pdb

Classification: LYASE
Organism(s): Pseudomonas aeruginosa
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-09-28 Released: 2022-10-19
Deposition Author(s): Robinson, D.A., Moynie, L., Naismith, J.H., Gray, D.W.
Funding Organization(s): Medical Research Council (MRC, United Kingdom)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.87 Å
R-Value Free:
0.226 (Depositor), 0.233 (DCC)
R-Value Work:
0.186 (Depositor), 0.196 (DCC)
R-Value Observed:
0.188 (Depositor)

Starting Model: experimental
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Ligand Structure Quality Assessment

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Literature

Crystal structure of 3-hydroxydecanoyl-acyl carrier protein dehydratase (FabA) from Pseudomonas aeruginosa in complex with Z30857828

Robinson, D.A., Gray, D.W.G.

To be published.

Macromolecule Content

Total Structure Weight: 94.24 kDa
Atom Count: 7,184
Modeled Residue Count: 849
Deposited Residue Count: 855
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase	A, B, C, D, E	171	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: fabA, PA1610 EC: 4.2.1.59 (PDB Primary Data), 5.3.3.14 (PDB Primary Data)
UniProt
Find proteins for O33877 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore O33877 Go to UniProtKB: O33877
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O33877
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
M25 (Subject of Investigation/LOI) Query on M25 Download:Ideal Coordinates CCD File SDF format, chain F [auth B] MOL2 format, chain F [auth B] mmCIF format, chain F [auth B]	F [auth B]	N-{2-[4-(AMINOSULFONYL)PHENYL]ETHYL}ACETAMIDE C₁₀ H₁₄ N₂ O₃ S IIMGUEXQORZTID-UHFFFAOYSA-N		Interactions Focus chain F [auth B] Interactions & Density Focus chain F [auth B]
DMS Query on DMS Download:Ideal Coordinates CCD File SDF format, chain H [auth C] SDF format, chain G [auth B] MOL2 format, chain H [auth C] MOL2 format, chain G [auth B] mmCIF format, chain H [auth C] mmCIF format, chain G [auth B]	G [auth B], H [auth C]	DIMETHYL SULFOXIDE C₂ H₆ O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N		Interactions Focus chain G [auth B] Focus chain H [auth C] Interactions & Density Focus chain G [auth B] Focus chain H [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.87 Å
R-Value Free: 0.226 (Depositor), 0.233 (DCC)
R-Value Work: 0.186 (Depositor), 0.196 (DCC)
R-Value Observed: 0.188 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 113.254	α = 90
b = 142.382	β = 114.05
c = 78.236	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MOLREP	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-10-19

Deposition Author(s):

Funding Organization	Location	Grant Number
Medical Research Council (MRC, United Kingdom)	United Kingdom	--

Revision History (Full details and data files)

Version 1.0: 2022-10-19
Type: Initial release
Version 1.1: 2024-01-31
Changes: Data collection, Refinement description

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