8AXW

The structure of mouse AsterC (GramD1c) with Ezetimibe


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.172 
  • R-Value Observed: 0.172 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.1 of the entry. See complete history


Literature

Aster-dependent nonvesicular transport facilitates dietary cholesterol uptake.

Ferrari, A.Whang, E.Xiao, X.Kennelly, J.P.Romartinez-Alonso, B.Mack, J.J.Weston, T.Chen, K.Kim, Y.Tol, M.J.Bideyan, L.Nguyen, A.Gao, Y.Cui, L.Bedard, A.H.Sandhu, J.Lee, S.D.Fairall, L.Williams, K.J.Song, W.Munguia, P.Russell, R.A.Martin, M.G.Jung, M.E.Jiang, H.Schwabe, J.W.R.Young, S.G.Tontonoz, P.

(2023) Science 382: eadf0966-eadf0966

  • DOI: https://doi.org/10.1126/science.adf0966
  • Primary Citation of Related Structures:  
    8AXW

  • PubMed Abstract: 

    Intestinal absorption is an important contributor to systemic cholesterol homeostasis. Niemann-Pick C1 Like 1 (NPC1L1) assists in the initial step of dietary cholesterol uptake, but how cholesterol moves downstream of NPC1L1 is unknown. We show that Aster-B and Aster-C are critical for nonvesicular cholesterol movement in enterocytes. Loss of NPC1L1 diminishes accessible plasma membrane (PM) cholesterol and abolishes Aster recruitment to the intestinal brush border. Enterocytes lacking Asters accumulate PM cholesterol and show endoplasmic reticulum cholesterol depletion. Aster-deficient mice have impaired cholesterol absorption and are protected against diet-induced hypercholesterolemia. Finally, the Aster pathway can be targeted with a small-molecule inhibitor to manipulate cholesterol uptake. These findings identify the Aster pathway as a physiologically important and pharmacologically tractable node in dietary lipid absorption.


  • Organizational Affiliation

    Department of Pathology and Laboratory Medicine, University of California, Los Angeles, Los Angeles, CA 90095, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein Aster-C224Mus musculusMutation(s): 0 
Gene Names: Gramd1c
UniProt & NIH Common Fund Data Resources
Find proteins for Q8CI52 (Mus musculus)
Explore Q8CI52 
Go to UniProtKB:  Q8CI52
IMPC:  MGI:2443024
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8CI52
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 5 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
H56 (Subject of Investigation/LOI)
Query on H56

Download Ideal Coordinates CCD File 
J [auth A](3~{R},4~{S})-1-(4-fluorophenyl)-3-[(3~{S})-3-(4-fluorophenyl)-3-oxidanyl-propyl]-4-(4-hydroxyphenyl)azetidin-2-one
C24 H21 F2 N O3
OLNTVTPDXPETLC-XPWALMASSA-N
PGE
Query on PGE

Download Ideal Coordinates CCD File 
I [auth A]TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
GOL
Query on GOL

Download Ideal Coordinates CCD File 
B [auth A],
E [auth A]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
EOH
Query on EOH

Download Ideal Coordinates CCD File 
C [auth A],
D [auth A],
F [auth A],
G [auth A]
ETHANOL
C2 H6 O
LFQSCWFLJHTTHZ-UHFFFAOYSA-N
CL
Query on CL

Download Ideal Coordinates CCD File 
H [auth A]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.60 Å
  • R-Value Free: 0.206 
  • R-Value Work: 0.172 
  • R-Value Observed: 0.172 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 49.625α = 90
b = 49.625β = 90
c = 144.775γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
xia2data reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Leducq FoundationFrance19CVD04

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-13
    Type: Initial release
  • Version 1.1: 2024-03-20
    Changes: Database references