8AWM | pdb_00008awm

RVFV GnH with Fab268 bound


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free: 
    0.279 (Depositor), 0.280 (DCC) 
  • R-Value Work: 
    0.247 (Depositor), 0.253 (DCC) 
  • R-Value Observed: 
    0.248 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 8AWM

This is version 1.3 of the entry. See complete history

Literature

Multifunctional human monoclonal antibody combination mediates protection against Rift Valley fever virus at low doses.

Chapman, N.S.Hulswit, R.J.G.Westover, J.L.B.Stass, R.Paesen, G.C.Binshtein, E.Reidy, J.X.Engdahl, T.B.Handal, L.S.Flores, A.Gowen, B.B.Bowden, T.A.Crowe Jr., J.E.

(2023) Nat Commun 14: 5650-5650

  • DOI: https://doi.org/10.1038/s41467-023-41171-3
  • Primary Citation Related Structures: 
    8AWL, 8AWM

  • PubMed Abstract: 

    The zoonotic Rift Valley fever virus (RVFV) can cause severe disease in humans and has pandemic potential, yet no approved vaccine or therapy exists. Here we describe a dual-mechanism human monoclonal antibody (mAb) combination against RVFV that is effective at minimal doses in a lethal mouse model of infection. We structurally analyze and characterize the binding mode of a prototypical potent Gn domain-A-binding antibody that blocks attachment and of an antibody that inhibits infection by abrogating the fusion process as previously determined. Surprisingly, the Gn domain-A antibody does not directly block RVFV Gn interaction with the host receptor low density lipoprotein receptor-related protein 1 (LRP1) as determined by a competitive assay. This study identifies a rationally designed combination of human mAbs deserving of future investigation for use in humans against RVFV infection. Using a two-pronged mechanistic approach, we demonstrate the potent efficacy of a rationally designed combination mAb therapeutic.


  • Organizational Affiliation
    • Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, TN, 37232, USA.

Macromolecule Content 

  • Total Structure Weight: 82.48 kDa 
  • Atom Count: 5,547 
  • Modeled Residue Count: 726 
  • Deposited Residue Count: 758 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Heavy chain Fab268A [auth H]219Homo sapiensMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Light chain Fab268B [auth L]214Homo sapiensMutation(s): 0 
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
GlycoproteinC [auth A]325Rift Valley fever virusMutation(s): 0 
UniProt
Find proteins for L7QH21 (Rift valley fever virus)
Explore L7QH21 
Go to UniProtKB:  L7QH21
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupL7QH21
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.50 Å
  • R-Value Free:  0.279 (Depositor), 0.280 (DCC) 
  • R-Value Work:  0.247 (Depositor), 0.253 (DCC) 
  • R-Value Observed: 0.248 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.072α = 90
b = 98.587β = 90
c = 123.133γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
xia2data reduction
xia2data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom203141/Z/16/Z
Medical Research Council (MRC, United Kingdom)United KingdomMR/V031635/1
Medical Research Council (MRC, United Kingdom)United KingdomMR/S007555/1

Revision History  (Full details and data files)

  • Version 1.0: 2023-09-06
    Type: Initial release
  • Version 1.1: 2023-09-27
    Changes: Database references
  • Version 1.2: 2024-11-13
    Changes: Structure summary
  • Version 1.3: 2026-03-04
    Changes: Refinement description