8ATU

Cryo-EM structure of human BIRC6


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural basis for regulation of apoptosis and autophagy by the BIRC6/SMAC complex.

Ehrmann, J.F.Grabarczyk, D.B.Heinke, M.Deszcz, L.Kurzbauer, R.Hudecz, O.Shulkina, A.Gogova, R.Meinhart, A.Versteeg, G.A.Clausen, T.

(2023) Science 379: 1117-1123

  • DOI: https://doi.org/10.1126/science.ade8873
  • Primary Citation of Related Structures:  
    8ATU, 8ATX, 8AUK, 8AUW

  • PubMed Abstract: 

    Inhibitor of apoptosis proteins (IAPs) bind to pro-apoptotic proteases, keeping them inactive and preventing cell death. The atypical ubiquitin ligase BIRC6 is the only essential IAP, additionally functioning as a suppressor of autophagy. We performed a structure-function analysis of BIRC6 in complex with caspase-9, HTRA2, SMAC, and LC3B, which are critical apoptosis and autophagy proteins. Cryo-electron microscopy structures showed that BIRC6 forms a megadalton crescent shape that arcs around a spacious cavity containing receptor sites for client proteins. Multivalent binding of SMAC obstructs client binding, impeding ubiquitination of both autophagy and apoptotic substrates. On the basis of these data, we discuss how the BIRC6/SMAC complex can act as a stress-induced hub to regulate apoptosis and autophagy drivers.


  • Organizational Affiliation

    Research Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Baculoviral IAP repeat-containing protein 6
A, B
4,867Homo sapiensMutation(s): 0 
Gene Names: BIRC6KIAA1289
EC: 2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NR09 (Homo sapiens)
Explore Q9NR09 
Go to UniProtKB:  Q9NR09
PHAROS:  Q9NR09
GTEx:  ENSG00000115760 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NR09
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION4.0

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
H2020 Marie Curie Actions of the European CommissionEuropean Union847548

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-15
    Type: Initial release
  • Version 1.1: 2023-02-22
    Changes: Database references
  • Version 1.2: 2023-03-29
    Changes: Database references
  • Version 1.3: 2024-07-24
    Changes: Data collection, Refinement description