8AP8

Peripheral stalk of Trypanosoma brucei mitochondrial ATP synthase


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

An ancestral interaction module promotes oligomerization in divergent mitochondrial ATP synthases.

Gahura, O.Muhleip, A.Hierro-Yap, C.Panicucci, B.Jain, M.Hollaus, D.Slapnickova, M.Zikova, A.Amunts, A.

(2022) Nat Commun 13: 5989-5989

  • DOI: https://doi.org/10.1038/s41467-022-33588-z
  • Primary Citation of Related Structures:  
    8AP6, 8AP7, 8AP8, 8AP9, 8APA, 8APB, 8APC, 8APD, 8APE, 8APF, 8APG, 8APH, 8APJ, 8APK

  • PubMed Abstract: 

    Mitochondrial ATP synthase forms stable dimers arranged into oligomeric assemblies that generate the inner-membrane curvature essential for efficient energy conversion. Here, we report cryo-EM structures of the intact ATP synthase dimer from Trypanosoma brucei in ten different rotational states. The model consists of 25 subunits, including nine lineage-specific, as well as 36 lipids. The rotary mechanism is influenced by the divergent peripheral stalk, conferring a greater conformational flexibility. Proton transfer in the lumenal half-channel occurs via a chain of five ordered water molecules. The dimerization interface is formed by subunit-g that is critical for interactions but not for the catalytic activity. Although overall dimer architecture varies among eukaryotes, we find that subunit-g together with subunit-e form an ancestral oligomerization motif, which is shared between the trypanosomal and mammalian lineages. Therefore, our data defines the subunit-g/e module as a structural component determining ATP synthase oligomeric assemblies.


  • Organizational Affiliation

    Institute of Parasitology, Biology Centre, Czech Academy of Sciences, 37005, České Budějovice, Czech Republic.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
OSCPA [auth M]255Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38AG1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Explore Q38AG1 
Go to UniProtKB:  Q38AG1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ38AG1
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ATPTB4B [auth h]157Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q389Z3 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Explore Q389Z3 
Go to UniProtKB:  Q389Z3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ389Z3
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
ATPTB3C [auth g]269Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q385E4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Explore Q385E4 
Go to UniProtKB:  Q385E4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ385E4
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
subunit-8D [auth c]114Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q585K5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Explore Q585K5 
Go to UniProtKB:  Q585K5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ585K5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
subunit-dE [auth d]370Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57ZW9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Explore Q57ZW9 
Go to UniProtKB:  Q57ZW9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ57ZW9
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research Council (ERC)European Union--

Revision History  (Full details and data files)

  • Version 1.0: 2022-10-26
    Type: Initial release