8AJQ | pdb_00008ajq

Crystal structure of PA2722 from Pseudomonas aeruginosa PAO1

PDB DOI: https://doi.org/10.2210/pdb8AJQ/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Pseudomonas aeruginosa PAO1
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-07-28 Released: 2022-10-05
Deposition Author(s): Popp, M.A., Blankenfeldt, W.
Funding Organization(s): German Research Foundation (DFG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.25 Å
R-Value Free:
0.152 (Depositor), 0.152 (DCC)
R-Value Work:
0.138 (Depositor), 0.138 (DCC)
R-Value Observed:
0.138 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 8AJQ

This is version 1.1 of the entry. See complete history.

Literature

Structure of PA2722 from P. aeruginosa PAO1

Popp, M.A., Blankenfeldt, W.

To be published.

Macromolecule Content

Total Structure Weight: 123.27 kDa
Atom Count: 10,796
Modeled Residue Count: 1,056
Deposited Residue Count: 1,056
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CENP-V/GFA domain-containing protein	A, B, C, D, E A, B, C, D, E, F, G, H	132	Pseudomonas aeruginosa PAO1	Mutation(s): 0 Gene Names: PA2722
UniProt
Find proteins for Q9I0C0 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I0C0 Go to UniProtKB: Q9I0C0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9I0C0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MES Query on MES Download:Ideal Coordinates CCD File SDF format, chain X [auth D] SDF format, chain T [auth C] SDF format, chain RA [auth H] SDF format, chain QA [auth H] SDF format, chain P [auth B] SDF format, chain O [auth B] SDF format, chain MA [auth G] SDF format, chain LA [auth G] SDF format, chain I [auth A] SDF format, chain GA [auth F] SDF format, chain CA [auth E] SDF format, chain BA [auth E] MOL2 format, chain X [auth D] MOL2 format, chain T [auth C] MOL2 format, chain RA [auth H] MOL2 format, chain QA [auth H] MOL2 format, chain P [auth B] MOL2 format, chain O [auth B] MOL2 format, chain MA [auth G] MOL2 format, chain LA [auth G] MOL2 format, chain I [auth A] MOL2 format, chain GA [auth F] MOL2 format, chain CA [auth E] MOL2 format, chain BA [auth E] mmCIF format, chain X [auth D] mmCIF format, chain T [auth C] mmCIF format, chain RA [auth H] mmCIF format, chain QA [auth H] mmCIF format, chain P [auth B] mmCIF format, chain O [auth B] mmCIF format, chain MA [auth G] mmCIF format, chain LA [auth G] mmCIF format, chain I [auth A] mmCIF format, chain GA [auth F] mmCIF format, chain CA [auth E] mmCIF format, chain BA [auth E]	BA [auth E] CA [auth E] GA [auth F] I [auth A] LA [auth G] BA [auth E], CA [auth E], GA [auth F], I [auth A], LA [auth G], MA [auth G], O [auth B], P [auth B], QA [auth H], RA [auth H], T [auth C], X [auth D]	2-(N-MORPHOLINO)-ETHANESULFONIC ACID C₆ H₁₃ N O₄ S SXGZJKUKBWWHRA-UHFFFAOYSA-N		Interactions Focus chain BA [auth E] Focus chain CA [auth E] Focus chain GA [auth F] Focus chain I [auth A] Focus chain LA [auth G] Focus chain MA [auth G] Focus chain O [auth B] Focus chain P [auth B] Focus chain QA [auth H] Focus chain RA [auth H] Focus chain T [auth C] Focus chain X [auth D] Interactions & Density Focus chain BA [auth E] Focus chain CA [auth E] Focus chain GA [auth F] Focus chain I [auth A] Focus chain LA [auth G] Focus chain MA [auth G] Focus chain O [auth B] Focus chain P [auth B] Focus chain QA [auth H] Focus chain RA [auth H] Focus chain T [auth C] Focus chain X [auth D]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain Y [auth D] SDF format, chain U [auth C] SDF format, chain SA [auth H] SDF format, chain Q [auth B] SDF format, chain NA [auth G] SDF format, chain L [auth A] SDF format, chain K [auth A] SDF format, chain J [auth A] SDF format, chain IA [auth F] SDF format, chain HA [auth F] SDF format, chain DA [auth E] MOL2 format, chain Y [auth D] MOL2 format, chain U [auth C] MOL2 format, chain SA [auth H] MOL2 format, chain Q [auth B] MOL2 format, chain NA [auth G] MOL2 format, chain L [auth A] MOL2 format, chain K [auth A] MOL2 format, chain J [auth A] MOL2 format, chain IA [auth F] MOL2 format, chain HA [auth F] MOL2 format, chain DA [auth E] mmCIF format, chain Y [auth D] mmCIF format, chain U [auth C] mmCIF format, chain SA [auth H] mmCIF format, chain Q [auth B] mmCIF format, chain NA [auth G] mmCIF format, chain L [auth A] mmCIF format, chain K [auth A] mmCIF format, chain J [auth A] mmCIF format, chain IA [auth F] mmCIF format, chain HA [auth F] mmCIF format, chain DA [auth E]	DA [auth E] HA [auth F] IA [auth F] J [auth A] K [auth A] DA [auth E], HA [auth F], IA [auth F], J [auth A], K [auth A], L [auth A], NA [auth G], Q [auth B], SA [auth H], U [auth C], Y [auth D]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain DA [auth E] Focus chain HA [auth F] Focus chain IA [auth F] Focus chain J [auth A] Focus chain K [auth A] Focus chain L [auth A] Focus chain NA [auth G] Focus chain Q [auth B] Focus chain SA [auth H] Focus chain U [auth C] Focus chain Y [auth D] Interactions & Density Focus chain DA [auth E] Focus chain HA [auth F] Focus chain IA [auth F] Focus chain J [auth A] Focus chain K [auth A] Focus chain L [auth A] Focus chain NA [auth G] Focus chain Q [auth B] Focus chain SA [auth H] Focus chain U [auth C] Focus chain Y [auth D]
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain Z [auth D] SDF format, chain W [auth C] SDF format, chain V [auth C] SDF format, chain UA [auth H] SDF format, chain TA [auth H] SDF format, chain S [auth B] SDF format, chain R [auth B] SDF format, chain PA [auth G] SDF format, chain OA [auth G] SDF format, chain N [auth A] SDF format, chain M [auth A] SDF format, chain KA [auth F] SDF format, chain JA [auth F] SDF format, chain FA [auth E] SDF format, chain EA [auth E] SDF format, chain AA [auth D] MOL2 format, chain Z [auth D] MOL2 format, chain W [auth C] MOL2 format, chain V [auth C] MOL2 format, chain UA [auth H] MOL2 format, chain TA [auth H] MOL2 format, chain S [auth B] MOL2 format, chain R [auth B] MOL2 format, chain PA [auth G] MOL2 format, chain OA [auth G] MOL2 format, chain N [auth A] MOL2 format, chain M [auth A] MOL2 format, chain KA [auth F] MOL2 format, chain JA [auth F] MOL2 format, chain FA [auth E] MOL2 format, chain EA [auth E] MOL2 format, chain AA [auth D] mmCIF format, chain Z [auth D] mmCIF format, chain W [auth C] mmCIF format, chain V [auth C] mmCIF format, chain UA [auth H] mmCIF format, chain TA [auth H] mmCIF format, chain S [auth B] mmCIF format, chain R [auth B] mmCIF format, chain PA [auth G] mmCIF format, chain OA [auth G] mmCIF format, chain N [auth A] mmCIF format, chain M [auth A] mmCIF format, chain KA [auth F] mmCIF format, chain JA [auth F] mmCIF format, chain FA [auth E] mmCIF format, chain EA [auth E] mmCIF format, chain AA [auth D]	AA [auth D] EA [auth E] FA [auth E] JA [auth F] KA [auth F] AA [auth D], EA [auth E], FA [auth E], JA [auth F], KA [auth F], M [auth A], N [auth A], OA [auth G], PA [auth G], R [auth B], S [auth B], TA [auth H], UA [auth H], V [auth C], W [auth C], Z [auth D]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain AA [auth D] Focus chain EA [auth E] Focus chain FA [auth E] Focus chain JA [auth F] Focus chain KA [auth F] Focus chain M [auth A] Focus chain N [auth A] Focus chain OA [auth G] Focus chain PA [auth G] Focus chain R [auth B] Focus chain S [auth B] Focus chain TA [auth H] Focus chain UA [auth H] Focus chain V [auth C] Focus chain W [auth C] Focus chain Z [auth D] Interactions & Density Focus chain AA [auth D] Focus chain EA [auth E] Focus chain FA [auth E] Focus chain JA [auth F] Focus chain KA [auth F] Focus chain M [auth A] Focus chain N [auth A] Focus chain OA [auth G] Focus chain PA [auth G] Focus chain R [auth B] Focus chain S [auth B] Focus chain TA [auth H] Focus chain UA [auth H] Focus chain V [auth C] Focus chain W [auth C] Focus chain Z [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.25 Å
R-Value Free: 0.152 (Depositor), 0.152 (DCC)
R-Value Work: 0.138 (Depositor), 0.138 (DCC)
R-Value Observed: 0.138 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.571	α = 90
b = 86.238	β = 90
c = 172.225	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2022-10-05

Deposition Author(s):

Blankenfeldt, W.

Funding Organization	Location	Grant Number
German Research Foundation (DFG)	Germany	BL587/5-1

Revision History (Full details and data files)

Version 1.0: 2022-10-05
Type: Initial release
Version 1.1: 2024-06-19
Changes: Data collection

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.