8AA8 | pdb_00008aa8

30S ribosomal protein S24e from Thermococcus barophilus

PDB DOI: https://doi.org/10.2210/pdb8AA8/pdb

Classification: GENE REGULATION
Organism(s): Thermococcus barophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-06-30 Released: 2023-07-12
Deposition Author(s): Calio, A., Hoh, F.
Funding Organization(s): Agence Nationale de la Recherche (ANR), Centre National de la Recherche Scientifique (CNRS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.71 Å
R-Value Free:
0.225 (Depositor), 0.235 (DCC)
R-Value Work:
0.186 (Depositor), 0.201 (DCC)
R-Value Observed:
0.188 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

30S ribosomal protein S24e from Thermococcus barophilus at 1.7A

Calio, A., Hoh, F.

To be published.

Macromolecule Content

Total Structure Weight: 23.33 kDa
Atom Count: 1,395
Modeled Residue Count: 162
Deposited Residue Count: 198
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S24e	A, B	99	Thermococcus barophilus	Mutation(s): 0 Gene Names: rps24e, TBCH5v1_2408
UniProt
Find proteins for A0A0S1XER1 (Thermococcus barophilus) Explore A0A0S1XER1 Go to UniProtKB: A0A0S1XER1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0S1XER1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.71 Å
R-Value Free: 0.225 (Depositor), 0.235 (DCC)
R-Value Work: 0.186 (Depositor), 0.201 (DCC)
R-Value Observed: 0.188 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 24.306	α = 91.36
b = 35.067	β = 89.95
c = 48.897	γ = 92.18

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-07-12

Deposition Author(s):

Funding Organization	Location	Grant Number
Agence Nationale de la Recherche (ANR)	France	17-CE11-0012-01
Centre National de la Recherche Scientifique (CNRS)	France	MITI OriginsUnderPressure et LifeAdapt

Revision History (Full details and data files)

Version 1.0: 2023-07-12
Type: Initial release
Version 1.1: 2024-02-07
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.