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 8A1E | pdb_00008a1e

Rabies virus glycoprotein in complex with Fab fragments of 17C7 and 1112-1 neutralizing antibodies


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history. 

Literature

Structure of trimeric pre-fusion rabies virus glycoprotein in complex with two protective antibodies.

Ng, W.M., Fedosyuk, S., English, S., Augusto, G., Berg, A., Thorley, L., Haselon, A.S., Segireddy, R.R., Bowden, T.A., Douglas, A.D.

(2022) Cell Host Microbe 30: 1219-1230.e7

  • DOI: https://doi.org/10.1016/j.chom.2022.07.014
  • Primary Citation Related Structures: 
    8A1E

  • PubMed Abstract: 

    Rabies virus (RABV) causes lethal encephalitis and is responsible for approximately 60,000 deaths per year. As the sole virion-surface protein, the rabies virus glycoprotein (RABV-G) mediates host-cell entry. RABV-G's pre-fusion trimeric conformation displays epitopes bound by protective neutralizing antibodies that can be induced by vaccination or passively administered for post-exposure prophylaxis. We report a 2.8-Å structure of a RABV-G trimer in the pre-fusion conformation, in complex with two neutralizing and protective monoclonal antibodies, 17C7 and 1112-1, that recognize distinct epitopes. One of these antibodies is a licensed prophylactic (17C7, Rabishield), which we show locks the protein in pre-fusion conformation. Targeted mutations can similarly stabilize RABV-G in the pre-fusion conformation, a key step toward structure-guided vaccine design. These data reveal the higher-order architecture of a key therapeutic target and the structural basis of neutralization by antibodies binding two key antigenic sites, and this will facilitate the development of improved vaccines and prophylactic antibodies.


  • Organizational Affiliation: 
    • Jenner Institute, Old Road Campus Research Building, Roosevelt Drive, Oxford OX3 7DQ, UK; Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UK.

Macromolecule Content 

  • Total Structure Weight: 106.57 kDa 
  • Atom Count: 6,134 
  • Modeled Residue Count: 790 
  • Deposited Residue Count: 961 
  • Unique protein chains: 5

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Glycoprotein505Rabies virus strain Pasteur vaccinMutation(s): 0 
UniProt
Find proteins for P08667 (Rabies virus (strain Pasteur vaccins / PV))
Explore P08667 
Go to UniProtKB:  P08667
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UniProt GroupP08667
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Fab 17C7 heavy chain variable domainB [auth D]119Homo sapiensMutation(s): 0 
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Fab 17C7 light chain variable domainC [auth E]109Homo sapiensMutation(s): 0 
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Fab 1112-1 light chain variable domainD [auth C]107Mus musculusMutation(s): 0 
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Fab 1112-1 heavy chain variable domainE [auth B]121Mus musculusMutation(s): 0 
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC3.1
MODEL REFINEMENTPHENIX1.19.2_4158

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom220679/Z/20/Z
Medical Research Council (MRC, United Kingdom)United KingdomMR/P017339/1
Medical Research Council (MRC, United Kingdom)United KingdomMR/S007555/1
Marie Sklodowska-Curie Actions, FragNET ITNEuropean Union840866
Wellcome TrustUnited Kingdom060208/Z/00/Z
Wellcome TrustUnited Kingdom093305/Z/10/Z
Wellcome TrustUnited Kingdom203141/Z/16/Z

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-17
    Type: Initial release
  • Version 1.1: 2022-08-31
    Changes: Database references
  • Version 1.2: 2022-09-28
    Changes: Database references
  • Version 1.3: 2024-11-06
    Changes: Data collection, Structure summary