7XGR | pdb_00007xgr

Structure of Gemin5 C-terminal region (protomer)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 7XGR

This is version 1.3 of the entry. See complete history

Literature

Structural basis for Gemin5 decamer-mediated mRNA binding.

Guo, Q.Zhao, S.Francisco-Velilla, R.Zhang, J.Embarc-Buh, A.Abellan, S.Lv, M.Tang, P.Gong, Q.Shen, H.Sun, L.Yao, X.Min, J.Shi, Y.Martinez-Salas, E.Zhang, K.Xu, C.

(2022) Nat Commun 13: 5166-5166

  • DOI: https://doi.org/10.1038/s41467-022-32883-z
  • Primary Citation Related Structures: 
    7XDT, 7XGR

  • PubMed Abstract: 

    Gemin5 in the Survival Motor Neuron (SMN) complex serves as the RNA-binding protein to deliver small nuclear RNAs (snRNAs) to the small nuclear ribonucleoprotein Sm complex via its N-terminal WD40 domain. Additionally, the C-terminal region plays an important role in regulating RNA translation by directly binding to viral RNAs and cellular mRNAs. Here, we present the three-dimensional structure of the Gemin5 C-terminal region, which adopts a homodecamer architecture comprised of a dimer of pentamers. By structural analysis, mutagenesis, and RNA-binding assays, we find that the intact pentamer/decamer is critical for the Gemin5 C-terminal region to bind cognate RNA ligands and to regulate mRNA translation. The Gemin5 high-order architecture is assembled via pentamerization, allowing binding to RNA ligands in a coordinated manner. We propose a model depicting the regulatory role of Gemin5 in selective RNA binding and translation. Therefore, our work provides insights into the SMN complex-independent function of Gemin5.


  • Organizational Affiliation
    • MOE Key Laboratory for Cellular Dynamics, School of Life Sciences, Division of Life Sciences and Medicine, University of Science and Technology of China, 230027, Hefei, China.

Macromolecule Content 

  • Total Structure Weight: 75.89 kDa 
  • Atom Count: 4,340 
  • Modeled Residue Count: 546 
  • Deposited Residue Count: 671 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Gem-associated protein 5671Homo sapiensMutation(s): 0 
Gene Names: GEMIN5
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TEQ6 (Homo sapiens)
Explore Q8TEQ6 
Go to UniProtKB:  Q8TEQ6
PHAROS:  Q8TEQ6
GTEx:  ENSG00000082516 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8TEQ6
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-24
    Type: Initial release
  • Version 1.1: 2022-09-14
    Changes: Database references
  • Version 1.2: 2024-07-03
    Changes: Data collection
  • Version 1.3: 2025-06-18
    Changes: Data collection, Structure summary