X-ray crystallographic snapshots of the thioazolidine formation upon the PLP during inhibition of SufS by D-cysteine
Nakamura, R., Takahashi, Y., Fujishiro, T.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cysteine desulfurase SufS | 419 | Bacillus subtilis subsp. subtilis str. 168 | Mutation(s): 0  Gene Names: sufS, csd, yurW, BSU32690 EC: 2.8.1.7 | ![]() | |
UniProt | |||||
Find proteins for O32164 (Bacillus subtilis (strain 168)) Explore O32164  Go to UniProtKB:  O32164 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O32164 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
9PV (Subject of Investigation/LOI) Query on 9PV | B [auth A] | (2~{S})-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3-sulfanyl-propanoic acid C11 H15 N2 O7 P S NUTWYOJHALJXFM-RZTFRGLUSA-N | |||
PGE Query on PGE | K [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N | |||
PEG Query on PEG | D [auth A] E [auth A] F [auth A] G [auth A] H [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N | |||
EDO Query on EDO | C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 92.9 | α = 90 |
b = 92.9 | β = 90 |
c = 129.4 | γ = 120 |
Software Name | Purpose |
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XSCALE | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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Japan Society for the Promotion of Science (JSPS) | Japan | 17K14510 |