7X5J | pdb_00007x5j

ACP-dependent oxoacyl reductase

PDB DOI: https://doi.org/10.2210/pdb7X5J/pdb

Classification: OXIDOREDUCTASE
Organism(s): Candidatus Methanoliparum
Expression System: Eschenbachia
Mutation(s): No

Deposited: 2022-03-04 Released: 2023-03-08
Deposition Author(s): Wang, S., Bai, L.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.247 (Depositor), 0.247 (DCC)
R-Value Work:
0.200 (Depositor), 0.200 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

ACP-dependent oxoacyl reductase

Wang, S., Bai, L.

To be published.

Macromolecule Content

Total Structure Weight: 168.47 kDa
Atom Count: 12,218
Modeled Residue Count: 1,534
Deposited Residue Count: 1,542
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-oxoacyl-ACP reductase	A [auth D] B [auth C] C [auth A] D [auth E] E [auth B] A [auth D], B [auth C], C [auth A], D [auth E], E [auth B], F	257	Candidatus Methanoliparum	Mutation(s): 0
UniProt
Find proteins for A0A520KTT2 (Methanoliparum thermophilum) Explore A0A520KTT2 Go to UniProtKB: A0A520KTT2
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A520KTT2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAP (Subject of Investigation/LOI) Query on NAP Download:Ideal Coordinates CCD File SDF format, chain M [auth F] SDF format, chain K [auth B] SDF format, chain J [auth E] SDF format, chain I [auth A] SDF format, chain H [auth C] SDF format, chain G [auth D] MOL2 format, chain M [auth F] MOL2 format, chain K [auth B] MOL2 format, chain J [auth E] MOL2 format, chain I [auth A] MOL2 format, chain H [auth C] MOL2 format, chain G [auth D] mmCIF format, chain M [auth F] mmCIF format, chain K [auth B] mmCIF format, chain J [auth E] mmCIF format, chain I [auth A] mmCIF format, chain H [auth C] mmCIF format, chain G [auth D]	G [auth D] H [auth C] I [auth A] J [auth E] K [auth B] G [auth D], H [auth C], I [auth A], J [auth E], K [auth B], M [auth F]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C₂₁ H₂₈ N₇ O₁₇ P₃ XJLXINKUBYWONI-NNYOXOHSSA-N		Interactions Focus chain G [auth D] Focus chain H [auth C] Focus chain I [auth A] Focus chain J [auth E] Focus chain K [auth B] Focus chain M [auth F] Interactions & Density Focus chain G [auth D] Focus chain H [auth C] Focus chain I [auth A] Focus chain J [auth E] Focus chain K [auth B] Focus chain M [auth F]
PHE (Subject of Investigation/LOI) Query on PHE Download:Ideal Coordinates CCD File SDF format, chain L [auth F] MOL2 format, chain L [auth F] mmCIF format, chain L [auth F]	L [auth F]	PHENYLALANINE C₉ H₁₁ N O₂ COLNVLDHVKWLRT-QMMMGPOBSA-N		Interactions Focus chain L [auth F] Interactions & Density Focus chain L [auth F]