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ACP-dependent oxoacyl reductase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3OSU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291.15 20%(v/v) Butanediol, 0.1 M Sodium acetate pH 4.5
Crystal Properties Matthews coefficient Solvent content 2.81 56.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.623 α = 90 b = 224.972 β = 90 c = 152.371 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL18U1 0.978 SSRF BL18U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 152.37 97.9 0.212 0.229 0.086 0.99 7.1 13.4 105199
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 1.757 1.896 0.706 0.699 13.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3OSU 2.1 97.275 105141 5212 97.672 0.202 0.2001 0.1998 0.2469 0.2467 42.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.947 -0.125 -2.822
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.152 r_dihedral_angle_4_deg 15.64 r_dihedral_angle_3_deg 15.588 r_dihedral_angle_1_deg 7.228 r_lrange_it 7.057 r_lrange_other 7.044 r_scangle_it 5.708 r_scangle_other 5.708 r_mcangle_it 4.152 r_mcangle_other 4.152
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.152 r_dihedral_angle_4_deg 15.64 r_dihedral_angle_3_deg 15.588 r_dihedral_angle_1_deg 7.228 r_lrange_it 7.057 r_lrange_other 7.044 r_scangle_it 5.708 r_scangle_other 5.708 r_mcangle_it 4.152 r_mcangle_other 4.152 r_dihedral_angle_other_2_deg 3.883 r_scbond_other 3.775 r_scbond_it 3.774 r_mcbond_it 2.992 r_mcbond_other 2.989 r_angle_refined_deg 1.517 r_angle_other_deg 1.329 r_nbd_refined 0.2 r_symmetry_xyhbond_nbd_refined 0.199 r_symmetry_nbd_other 0.175 r_nbd_other 0.16 r_xyhbond_nbd_refined 0.157 r_nbtor_refined 0.154 r_xyhbond_nbd_other 0.113 r_symmetry_nbd_refined 0.105 r_chiral_restr 0.073 r_symmetry_nbtor_other 0.073 r_symmetry_xyhbond_nbd_other 0.063 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11408 Nucleic Acid Atoms Solvent Atoms 511 Heterogen Atoms 299
Software Software Software Name Purpose REFMAC refinement REFMAC refinement PHENIX phasing