7RO3

Cryo-EM reconstruction of Sulfolobus monocaudavirus SMV1, symmetry 2


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Spindle-shaped archaeal viruses evolved from rod-shaped ancestors to package a larger genome.

Wang, F.Cvirkaite-Krupovic, V.Vos, M.Beltran, L.C.Kreutzberger, M.A.B.Winter, J.M.Su, Z.Liu, J.Schouten, S.Krupovic, M.Egelman, E.H.

(2022) Cell 185: 1297

  • DOI: https://doi.org/10.1016/j.cell.2022.02.019
  • Primary Citation of Related Structures:  
    7RO2, 7RO3, 7RO4, 7RO5, 7RO6, 7ROB, 7ROC, 7ROD, 7ROE, 7ROG, 7ROH, 7ROI

  • PubMed Abstract: 

    Spindle- or lemon-shaped viruses infect archaea in diverse environments. Due to the highly pleomorphic nature of these virions, which can be found with cylindrical tails emanating from the spindle-shaped body, structural studies of these capsids have been challenging. We have determined the atomic structure of the capsid of Sulfolobus monocaudavirus 1, a virus that infects hosts living in nearly boiling acid. A highly hydrophobic protein, likely integrated into the host membrane before the virions assemble, forms 7 strands that slide past each other in both the tails and the spindle body. We observe the discrete steps that occur as the tail tubes expand, and these are due to highly conserved quasiequivalent interactions with neighboring subunits maintained despite significant diameter changes. Our results show how helical assemblies can vary their diameters, becoming nearly spherical to package a larger genome and suggest how all spindle-shaped viruses have evolved from archaeal rod-like viruses.


  • Organizational Affiliation

    Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22903, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
major capsid protein157Sulfolobus monocaudavirus SMV1Mutation(s): 0 
UniProt
Find proteins for W0UUV5 (Sulfolobus monocaudavirus SMV1)
Explore W0UUV5 
Go to UniProtKB:  W0UUV5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupW0UUV5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.80 Å
  • Aggregation State: FILAMENT 
  • Reconstruction Method: HELICAL 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR35GM122510
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesK99GM138756

Revision History  (Full details and data files)

  • Version 1.0: 2022-03-30
    Type: Initial release
  • Version 1.1: 2022-04-06
    Changes: Database references
  • Version 1.2: 2022-04-27
    Changes: Database references