7NVG

Salmonella flagellar basal body refined in C1 map


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.4 of the entry. See complete history


Literature

Molecular structure of the intact bacterial flagellar basal body.

Johnson, S.Furlong, E.J.Deme, J.C.Nord, A.L.Caesar, J.J.E.Chevance, F.F.V.Berry, R.M.Hughes, K.T.Lea, S.M.

(2021) Nat Microbiol 6: 712-721

  • DOI: https://doi.org/10.1038/s41564-021-00895-y
  • Primary Citation of Related Structures:  
    7BGL, 7BHQ, 7BIN, 7BJ2, 7BK0, 7NVG

  • PubMed Abstract: 

    The bacterial flagellum is a macromolecular protein complex that enables motility in many species. Bacterial flagella self-assemble a strong, multicomponent drive shaft that couples rotation in the inner membrane to the micrometre-long flagellar filament that powers bacterial swimming in viscous fluids 1-3 . Here, we present structures of the intact Salmonella flagellar basal body 4 , encompassing the inner membrane rotor, drive shaft and outer-membrane bushing, solved using cryo-electron microscopy to resolutions of 2.2-3.7 Å. The structures reveal molecular details of how 173 protein molecules of 13 different types assemble into a complex spanning two membranes and a cell wall. The helical drive shaft at one end is intricately interwoven with the rotor component with both the export gate complex and the proximal rod forming interactions with the MS-ring. At the other end, the drive shaft distal rod passes through the LP-ring bushing complex, which functions as a molecular bearing anchored in the outer membrane through interactions with the lipopolysaccharide. The in situ structure of a protein complex capping the drive shaft provides molecular insights into the assembly process of this molecular machine.


  • Organizational Affiliation

    Sir William Dunn School of Pathology, University of Oxford, Oxford, UK. steven.johnson@path.ox.ac.uk.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar M-ring protein560Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
Find proteins for P15928 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein FliPIA [auth A2],
JA [auth B2],
KA [auth C2],
LA [auth D2],
MA [auth E2]
245Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
Find proteins for A0A0D6FLD2 (Salmonella typhimurium)
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UniProt GroupA0A0D6FLD2
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein FliRNA [auth F2]264Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar biosynthetic protein FliQOA [auth G2],
PA [auth H2],
QA [auth I2],
RA [auth J2]
89Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
Find proteins for A0A0F7J7J8 (Salmonella typhimurium)
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar hook-basal body complex protein FliE104Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar basal body rod protein FlgBAB [auth S2],
BB [auth T2],
CB [auth U2],
YA [auth Q2],
ZA [auth R2]
138Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar basal-body rod protein FlgC134Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar basal body proteinJB [auth b2],
KB [auth c2],
LB [auth d2],
MB [auth e2],
NB [auth f2]
251Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar basal-body rod protein FlgG260Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar L-ring protein232Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Flagellar P-ring protein365Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Basal-body rod modification protein FlgDME [auth A4],
NE [auth B4],
OE [auth C4],
PE [auth D4],
QE [auth E4]
232Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom219477
Wellcome TrustUnited Kingdom209194
Wellcome TrustUnited Kingdom201536
Medical Research Council (MRC, United Kingdom)United KingdomS021264

Revision History  (Full details and data files)

  • Version 1.0: 2021-05-05
    Type: Initial release
  • Version 1.1: 2021-05-19
    Changes: Database references
  • Version 1.2: 2021-06-09
    Changes: Database references
  • Version 1.3: 2021-07-14
    Changes: Derived calculations
  • Version 1.4: 2024-10-23
    Changes: Data collection, Database references, Structure summary