7M6B

The Crystal Structure of Mcbe1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.206 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Target highlights in CASP14: Analysis of models by structure providers.

Alexander, L.T.Lepore, R.Kryshtafovych, A.Adamopoulos, A.Alahuhta, M.Arvin, A.M.Bomble, Y.J.Bottcher, B.Breyton, C.Chiarini, V.Chinnam, N.B.Chiu, W.Fidelis, K.Grinter, R.Gupta, G.D.Hartmann, M.D.Hayes, C.S.Heidebrecht, T.Ilari, A.Joachimiak, A.Kim, Y.Linares, R.Lovering, A.L.Lunin, V.V.Lupas, A.N.Makbul, C.Michalska, K.Moult, J.Mukherjee, P.K.Nutt, W.S.Oliver, S.L.Perrakis, A.Stols, L.Tainer, J.A.Topf, M.Tsutakawa, S.E.Valdivia-Delgado, M.Schwede, T.

(2021) Proteins 89: 1647-1672

  • DOI: https://doi.org/10.1002/prot.26247
  • Primary Citation of Related Structures:  
    7M6B, 7OC9

  • PubMed Abstract: 

    The biological and functional significance of selected Critical Assessment of Techniques for Protein Structure Prediction 14 (CASP14) targets are described by the authors of the structures. The authors highlight the most relevant features of the target proteins and discuss how well these features were reproduced in the respective submitted predictions. The overall ability to predict three-dimensional structures of proteins has improved remarkably in CASP14, and many difficult targets were modeled with impressive accuracy. For the first time in the history of CASP, the experimentalists not only highlighted that computational models can accurately reproduce the most critical structural features observed in their targets, but also envisaged that models could serve as a guidance for further studies of biologically-relevant properties of proteins.


  • Organizational Affiliation

    Biozentrum, University of Basel, Basel, Switzerland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Site-specific DNA-methyltransferase (adenine-specific)A [auth B],
B [auth A]
287Caldicellulosiruptor bescii DSM 6725Mutation(s): 0 
Gene Names: Athe_2437
EC: 2.1.1.72
UniProt
Find proteins for B9MNH4 (Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / KCTC 15123 / Z-1320))
Explore B9MNH4 
Go to UniProtKB:  B9MNH4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupB9MNH4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.206 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.446α = 90
b = 73.75β = 90
c = 160.988γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MOLREPphasing
PROTEUM PLUSdata scaling
PROTEUM PLUSdata collection
PROTEUM PLUSdata reduction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Department of Energy (DOE, United States)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2021-04-14
    Type: Initial release
  • Version 1.1: 2022-04-27
    Changes: Database references
  • Version 1.2: 2023-10-18
    Changes: Data collection, Refinement description